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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQLALSAPPWLSRATV
AHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLA
DIGLVTFPVTSGSKGLHLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPY
SLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDA

The query sequence (length=288) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2iry:A 288 288 1.0000 1.0000 1.0000 0.0 2irx:A, 2iry:B, 4mky:B, 4mky:A, 4mky:C, 4mky:D, 3pky:A, 3pky:B, 2r9l:A, 2r9l:B
2 6sa0:A 333 261 0.2778 0.2402 0.3065 9.42e-28 6sa0:D, 6sa1:A, 6sa1:D
3 2faq:A 295 253 0.2500 0.2441 0.2846 5.59e-26 2faq:B, 2far:A, 2far:B
4 2bru:B 364 57 0.0625 0.0495 0.3158 3.7 1x14:B, 1x15:B
5 1emd:A 312 111 0.1111 0.1026 0.2883 6.1 1ib6:A, 1ib6:C, 1ib6:D, 1ie3:A, 1ie3:B, 1ie3:C, 1ie3:D, 5kka:A, 5kka:B
6 6fp5:B 86 24 0.0347 0.1163 0.4167 7.3 6fp5:A
7 4cu7:A 848 36 0.0521 0.0177 0.4167 9.9 4cu8:A, 4cuc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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