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BioLiP
>protein
GSALFLVIFAYLLGSITFGEVIAKLKGVDLRNVGSGNVGATNVTRALGKKYGVLVFFLDFLKGFIPALIAVKSFGIDSWV
LTFTGLASVLGHMYPVFFGFKGGKGVATALGVVFAVSPSVALFSFLVWLGIFLWKRYVSLASITATISAFLFLFVAGYPV
NVLFMAIVIGALIIYRHRENINRLLTGREHRFGTLEVLFQ

The query sequence (length=200) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7cqm:A 200 200 1.0000 1.0000 1.0000 8.60e-139 7cqm:B, 5xj5:A, 5xj6:A, 5xj7:A, 5xj8:A, 5xj8:B, 5xj9:A
2 3abb:A 383 168 0.2050 0.1070 0.2440 0.63
3 5d4v:B 260 45 0.0700 0.0538 0.3111 6.9 5d4u:A, 5d4u:B, 5d4u:C, 5d4u:D, 5d4v:A, 5d4v:C, 5d4v:D
4 6qm5:A 673 52 0.0750 0.0223 0.2885 7.8 6qm5:B, 6qm9:A, 6qm9:B, 6qma:A, 6qma:B, 6qmb:A, 6qmb:B, 8toi:A, 8toi:B, 8tok:A, 8tok:B, 8tol:A, 8tol:B, 4wis:A, 4wis:B, 4wit:A, 4wit:B
5 3dv9:A 243 40 0.0650 0.0535 0.3250 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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