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BioLiP
>protein
GSAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKP

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1fu9:A 36 36 1.0000 1.0000 1.0000 1.18e-21 1jn7:A
2 1fv5:A 36 35 0.3056 0.3056 0.3143 0.074 2l6z:B, 1y0j:B
3 2ena:A 46 37 0.3333 0.2609 0.3243 0.20
4 2emb:A 44 32 0.3056 0.2500 0.3438 0.32
5 7aih:Ay 142 19 0.2500 0.0634 0.4737 0.54 7ane:Ay
6 8j6n:A 390 32 0.3611 0.0333 0.4062 0.70 8j6n:D, 8j6n:B, 8j6n:C, 8j6n:E, 8j6n:H, 8j6n:J, 8j6n:K, 8j6n:F, 8j6n:G, 8j6n:I, 8j6n:L
7 2el6:A 46 26 0.2500 0.1957 0.3462 0.94
8 2emx:A 44 26 0.2500 0.2045 0.3462 3.6
9 7w02:A 1566 31 0.2500 0.0057 0.2903 4.0
10 2ep0:A 46 26 0.2222 0.1739 0.3077 5.2
11 2eml:A 46 26 0.1944 0.1522 0.2692 5.4
12 2em9:A 46 26 0.2222 0.1739 0.3077 5.8
13 2ytf:A 46 26 0.2222 0.1739 0.3077 6.0 2eof:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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