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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR
DNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGM

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ifd:2y 135 125 1.0000 0.9259 1.0000 2.24e-89 7a01:C3, 7a09:w, 5a2q:R, 5aj0:BR, 9bdl:AS17, 9bdn:AS17, 9bdp:AS17, 8bhf:S3, 9bkd:M, 9bln:M, 8btk:Aq, 7cpu:SR, 7cpv:SR, 6d90:SS, 6d9j:SS, 9f1b:Aq, 9f1c:Aq, 9f1d:Aq, 6fec:e, 5flx:R, 6g18:R, 6g4s:R, 6g4w:R, 6g51:R, 6g53:R, 6g5h:R, 6g5i:R, 8g5y:SR, 8g5z:SR, 8g60:SR, 8g61:SR, 8g6j:SR, 8glp:SR, 6gz3:BR, 6gz4:BR, 6gz5:BR, 6hcf:S1, 6hcj:S2, 6hcm:S1, 6hcq:S2, 8ife:2y, 6ip5:2y, 6ip6:2y, 6ip8:2y, 3j7p:SR, 3j7r:SR, 3jag:RR, 3jah:RR, 3jai:RR, 3jaj:SR, 3jan:SR, 8jdj:AD, 8jdk:AD, 8jdl:AD, 8jdm:AD, 7jqb:S, 7jqc:S, 5k0y:e, 8k2c:SR, 7k5i:R, 4kzx:R, 4kzy:R, 4kzz:R, 5lks:SR, 7ls1:z2, 7ls2:z2, 5lzs:RR, 5lzt:RR, 5lzu:RR, 5lzv:RR, 5lzw:RR, 5lzx:RR, 5lzy:RR, 5lzz:RR, 7mdz:RR, 7mq8:NU, 7mqa:NU, 6mtb:RR, 6mtc:RR, 6mtd:RR, 6mte:RR, 7nwg:S2, 7nwh:RR, 7nwi:RR, 7o7y:Aq, 7o7z:Aq, 7o80:Aq, 7o81:Aq, 5oa3:R, 6ole:SR, 6olf:SR, 6olg:BR, 6oli:SR, 6olz:BR, 6om0:SR, 6om7:SR, 7oya:R2, 7oyb:R2, 7oyc:R2, 7oyd:RR, 8oz0:v, 8p03:T, 8p09:T, 8p2k:Aq, 6p4g:S, 6p4h:S, 6p5i:S, 6p5j:S, 6p5k:S, 6p5n:S, 8pj1:M, 8pj2:M, 8pj3:M, 8pj4:M, 8pj5:M, 8pj6:M, 8ppk:R, 8ppl:AR, 8q7z:Aq, 8q87:Aq, 7qgg:SR, 8qoi:SR, 7qp6:M, 7qp7:M, 7qvp:SR, 7qvp:RR, 6qzp:SR, 7r4x:R, 6r5q:KK, 6r6g:KK, 6r6p:YY, 6r7q:KK, 8scb:RR, 6sgc:S1, 7syg:S, 7syh:S, 7syi:S, 7syj:S, 7syk:S, 7syl:S, 7sym:S, 7syn:S, 7syo:S, 7syp:S, 7syq:S, 7syr:S, 7sys:S, 7syt:S, 7syu:S, 7syv:S, 7syw:S, 7syx:S, 5t2c:Az, 8t4s:R, 7toq:AS17, 7tor:AS17, 7tql:S, 7ucj:RR, 7uck:RR, 4ug0:SR, 4v6x:AR, 5vyc:R1, 5vyc:R2, 5vyc:R3, 5vyc:R4, 5vyc:R5, 5vyc:R6, 6w2s:S, 6w2t:S, 7wtt:R, 7wtu:R, 7wtv:R, 7wtw:R, 7wtx:R, 7wtz:R, 7wu0:R, 6xa1:SR, 7xnx:SR, 7xny:SR, 8xsx:SR, 8xsy:SR, 8xsz:SR, 8xxl:SR, 8xxm:SR, 8xxn:SR, 6y0g:SR, 8y0w:SR, 8y0x:SR, 6y2l:SR, 6y57:SR, 6yal:T, 6yam:T, 6yan:T, 6ybs:X, 6ybw:M, 8yoo:SR, 8yop:SR, 6z6l:SR, 6z6m:SR, 6z6n:SR, 7zjw:Sc, 7zjx:Sc, 6zlw:S, 6zm7:SR, 6zme:SR, 6zmi:SR, 6zmo:SR, 6zmt:S, 6zmw:M, 6zn5:S, 6zoj:R, 6zok:R, 6zol:R, 6zon:w, 6zp4:w, 6zuo:R, 6zv6:R, 6zvh:R, 6zvj:w, 6zvk:C3, 6zxd:R, 6zxe:R, 6zxf:R, 6zxg:R, 6zxh:R
2 4d5l:R 109 121 0.8720 1.0000 0.9008 4.19e-74 4d61:R, 4ujc:CR, 4ujd:CR, 4uje:BR
3 4v6w:AR 120 119 0.7680 0.8000 0.8067 7.60e-67 6xu6:AR, 6xu7:AR, 6xu8:AR
4 9bh5:AR 121 121 0.6880 0.7107 0.7107 5.24e-57 9cai:AR
5 7olc:SR 128 118 0.6720 0.6562 0.7119 6.74e-55 7old:SR, 8oo0:SR, 7r81:S2, 7z3n:SR, 7z3o:SR
6 4v3p:SQ 141 126 0.6400 0.5674 0.6349 1.17e-52 8ip8:qa, 8ip9:qa, 8ipa:qa, 8ipb:qa, 8jiw:BR, 8r57:h, 4v7e:BR
7 4v5o:AV 121 116 0.5920 0.6116 0.6379 2.64e-51 4bts:AV, 4bts:BV, 4bts:CV, 4bts:DV, 4v5o:BV
8 6zj3:SV 125 124 0.6160 0.6160 0.6210 3.93e-51
9 5xxu:R 117 118 0.6000 0.6410 0.6356 1.15e-50
10 8oeq:DE 125 114 0.6080 0.6080 0.6667 2.27e-50 8c3a:T, 8c3a:DE, 8cq7:T, 8cq7:DE, 8cqw:T, 8cqw:DE, 8cre:T, 8cre:DE, 8oeq:T, 7pzy:S, 7q08:S, 7q0f:S, 7q0p:S, 7q0r:S, 8q5i:S
11 5xyi:R 118 117 0.5600 0.5932 0.5983 3.05e-50
12 8auv:D 119 113 0.5840 0.6134 0.6460 4.93e-50 8b2l:D1, 7qiy:I, 7qiz:AA
13 4v6i:AQ 136 112 0.6000 0.5515 0.6696 1.34e-49 7a1g:H, 7b7d:G, 8bqd:G, 8bqx:G, 8cah:H, 8cas:I, 8cbj:R, 8ccs:t, 8cdl:t, 8cdr:t, 8ceh:t, 8cf5:t, 8cg8:t, 8cgn:t, 8civ:t, 8cku:t, 8cmj:t, 5dat:C7, 5dat:c7, 5dc3:C7, 5dc3:c7, 5dge:C7, 5dge:c7, 5dgf:C7, 5dgf:c7, 5dgv:C7, 5dgv:c7, 6eml:C, 8eub:BR, 8evp:BR, 8evq:BR, 8evr:BR, 8evs:BR, 8evt:BR, 8ewb:BR, 8ewc:BR, 6fai:R, 5fci:C7, 5fci:c7, 5fcj:C7, 5fcj:c7, 6fyx:R, 6fyy:R, 6gq1:AH, 6gqb:AH, 6gqv:AH, 6gsn:R, 6hhq:S, 6hhq:c7, 5i4l:C7, 5i4l:c7, 6i7o:G, 6i7o:Gb, 8i7j:R, 5it7:R, 5it9:R, 3j6x:17, 3j6y:17, 3j77:17, 3j78:17, 3j80:R, 3j81:R, 3jam:R, 3jap:R, 5juo:OB, 5jup:OB, 5jus:OB, 5jut:OB, 5juu:OB, 8k2d:SR, 8k82:SR, 5lyb:C7, 5lyb:c7, 5m1j:R2, 5mc6:G, 5mei:c7, 5mei:S, 7mpi:BR, 7mpj:BR, 7n8b:BR, 5ndg:C7, 5ndg:c7, 5ndv:C7, 5ndv:c7, 5ndw:C7, 5ndw:c7, 7nrc:SG, 7nrd:SG, 5obm:C7, 5obm:c7, 5on6:c7, 5on6:S, 7osa:eS17, 7osm:eS17, 6q8y:G, 6rbd:R, 6rbe:R, 7rr5:SR, 8rw1:R, 6s47:BS, 8s8d:R, 8s8e:R, 8s8f:R, 8s8g:R, 8s8h:R, 8s8i:R, 8s8j:R, 6snt:R, 6sv4:G, 6sv4:Gb, 6sv4:Gc, 6t4q:SR, 6t7i:SR, 6t7t:SR, 6t83:Rb, 6t83:s, 5tbw:S, 5tbw:c7, 6tb3:G, 5tga:C7, 5tga:c7, 5tgm:C7, 5tgm:c7, 6tnu:G, 4u3m:C7, 4u3m:c7, 4u3n:C7, 4u3n:c7, 4u3u:C7, 4u3u:c7, 4u4n:C7, 4u4n:c7, 4u4o:C7, 4u4o:c7, 4u4q:C7, 4u4q:c7, 4u4r:C7, 4u4r:c7, 4u4u:C7, 4u4u:c7, 4u4y:C7, 4u4y:c7, 4u4z:C7, 4u4z:c7, 4u50:C7, 4u50:c7, 4u51:C7, 4u51:c7, 4u52:C7, 4u52:c7, 4u53:C7, 4u53:c7, 4u55:C7, 4u55:c7, 4u56:C7, 4u56:c7, 4u6f:C7, 4u6f:c7, 4uer:V, 6uz7:R, 4v88:AR, 4v88:CR, 4v8y:AR, 4v8z:AR, 4v92:BR, 6wdr:R, 6woo:RR, 6xiq:AH, 6xir:AH, 6y7c:R, 6z6j:SR, 6z6k:SR, 6zce:S, 7zpq:AR, 7zrs:AR, 6zu9:I, 7zuw:AR, 7zux:DR, 6zvi:z, 7zw0:sG
14 4v8m:AL 126 114 0.5520 0.5476 0.6053 8.00e-45 7ase:i, 5opt:k, 8ova:AL, 8ove:AL
15 6az1:V 122 114 0.5200 0.5328 0.5702 1.63e-42 8a3w:SV, 8a98:SV, 8ovj:SV, 8rxh:SV, 8rxx:SV, 5t2a:AL
16 3j7a:W 95 107 0.5280 0.6947 0.6168 5.41e-42 3jbn:W, 3jbo:W, 3jbp:W, 6okk:W, 8tpu:SW
17 6gsm:R 111 108 0.5200 0.5856 0.6019 2.35e-39
18 8bn3:C7 92 70 0.4080 0.5543 0.7286 2.67e-33
19 8bsj:SU 121 117 0.5200 0.5372 0.5556 3.92e-31 8br8:SU, 8brm:SU, 8bsi:SU, 8btd:SU, 8btr:SU, 8fvy:R, 8g4s:R
20 6rm3:SR0 117 105 0.3840 0.4103 0.4571 6.03e-30
21 6zu5:SR0 113 105 0.4480 0.4956 0.5333 1.72e-27
22 7qep:C7 117 118 0.4480 0.4786 0.4746 3.34e-26
23 8p5d:SR0 119 105 0.3920 0.4118 0.4667 8.84e-25 8p60:SR0, 8p60:RR0, 7qca:SR0
24 7pwf:R 101 113 0.4480 0.5545 0.4956 4.41e-22 7pwo:R1
25 5jb3:S 67 65 0.2000 0.3731 0.3846 8.98e-11 5jbh:S, 6sw9:S, 6swc:S, 6swe:S, 4v4n:BS, 4v6u:AS, 7zag:S, 7zah:S, 7zai:S, 7zhg:S
26 6tmf:T 64 63 0.1760 0.3438 0.3492 2.13e-09
27 6skf:At 64 63 0.1680 0.3281 0.3333 5.78e-09 6skg:At, 6skg:Bm, 6th6:At
28 8rg0:M 32 34 0.2080 0.8125 0.7647 6.37e-09
29 8hkx:S17E 62 58 0.1680 0.3387 0.3621 2.79e-08 8hky:S17E, 8hkz:S17E, 8hl1:S17E, 8hl2:S17E, 8hl3:S17E, 8hl4:S17E, 8hl5:S17E, 8wkp:S17E, 8wq2:S17E, 8wq4:S17E
30 1o98:A 509 92 0.1600 0.0393 0.2174 0.13 1ejj:A, 1eqj:A, 1o99:A
31 1i09:A 338 88 0.2080 0.0769 0.2955 0.43 4dit:A, 4iq6:A, 3l1s:A
32 1j1b:B 364 88 0.2080 0.0714 0.2955 0.51 4acc:A, 4acc:B, 4acd:A, 4acd:B, 4acg:A, 4acg:B, 4ach:A, 4ach:B, 6ae3:A, 6ae3:B, 4afj:A, 4afj:B, 8auz:A, 8auz:B, 8av1:A, 8av1:B, 7b6f:A, 4b7t:A, 6b8j:A, 8djc:A, 8djc:B, 8djd:A, 8djd:B, 8dje:A, 8dje:B, 3du8:A, 3du8:B, 3f7z:A, 3f7z:B, 3f88:A, 3f88:B, 5f94:A, 5f94:B, 5f95:A, 5f95:B, 8ff8:A, 8ff8:B, 3gb2:A, 6gjo:A, 6gjo:B, 1gng:A, 1gng:B, 6gn1:B, 6gn1:A, 6h0u:A, 6h0u:B, 6hk3:A, 6hk3:B, 6hk4:A, 6hk4:B, 6hk7:A, 5hln:A, 5hln:B, 5hlp:A, 5hlp:B, 1i09:B, 3i4b:A, 3i4b:B, 4iq6:B, 1j1b:A, 1j1c:A, 1j1c:B, 4j1r:A, 4j1r:B, 4j1r:C, 4j1r:D, 4j71:A, 4j71:B, 2jld:A, 2jld:B, 5k5n:A, 5k5n:B, 5kpk:A, 5kpk:B, 5kpl:A, 5kpl:B, 5kpm:A, 5kpm:B, 3l1s:B, 3m1s:A, 3m1s:B, 4nm0:A, 4nm3:A, 4nm5:A, 4nm7:A, 4nu1:A, 2o5k:A, 1o9u:A, 2ow3:A, 2ow3:B, 5oy4:A, 5oy4:B, 7oy5:A, 7oy5:B, 4ptc:A, 4ptc:B, 4pte:A, 4pte:B, 4ptg:A, 4ptg:B, 3pup:A, 3pup:B, 1pyx:A, 1pyx:B, 1q3d:A, 1q3d:B, 1q3w:A, 1q3w:B, 3q3b:A, 3q3b:B, 1q41:A, 1q41:B, 1q4l:A, 1q4l:B, 1q5k:A, 1q5k:B, 8qji:A, 1r0e:A, 1r0e:B, 3say:A, 3say:B, 3sd0:A, 3sd0:B, 7sxh:A, 7sxj:A, 5t31:A, 5t31:B, 6tcu:A, 7u2z:A, 7u2z:B, 7u31:A, 7u31:B, 7u33:A, 7u33:B, 7u36:A, 7u36:B, 1uv5:A, 6v6l:A, 8vme:A, 8vmf:A, 8vmg:A, 8xn6:A, 8xn6:B, 6y9r:A, 6y9s:A, 6y9s:B, 7z1f:A, 7z1f:B, 7z1g:A, 3zdi:A, 3zrk:A, 3zrk:B, 3zrl:A, 3zrl:B, 3zrm:A, 3zrm:B
33 7sxf:A 340 28 0.1200 0.0441 0.5357 1.6 7sxg:A
34 2w0a:A 424 88 0.1920 0.0566 0.2727 3.5 2ci0:A, 2cib:A, 2w09:A
35 6pl6:B 577 63 0.1440 0.0312 0.2857 3.6
36 4ai6:A 2650 47 0.1200 0.0057 0.3191 7.6 4ai6:B, 4akg:A, 4akg:B, 4akh:A, 4akh:B, 4aki:A, 4aki:B, 3crt:A, 3cru:A, 3d0z:A, 1dug:A, 1dug:B, 1gne:A, 1gtb:A, 8gyd:A, 8gyd:B, 5gzz:B, 5gzz:C, 5gzz:D, 5gzz:E, 5gzz:F, 5gzz:G, 6ji6:A, 1m99:A, 1m9a:A, 1m9b:A, 7mi3:A, 7mi6:A, 6rwd:A, 6rwd:B, 1u87:A, 1u88:A, 1ua5:A, 4wr4:A, 4wr5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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