Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rkq:A 58 58 1.0000 1.0000 1.0000 1.38e-36 3rkq:B
2 5flv:M 229 52 0.8966 0.2271 1.0000 1.92e-30 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
3 1nk2:P 77 57 0.7414 0.5584 0.7544 7.07e-27 1nk3:P
4 1ig7:A 58 56 0.5862 0.5862 0.6071 2.64e-18
5 4rdu:D 62 56 0.5517 0.5161 0.5714 4.73e-17 4rdu:A, 4xrs:I, 4xrs:G
6 3a01:A 78 55 0.5517 0.4103 0.5818 9.18e-17 3a01:E
7 8pna:A 67 56 0.5345 0.4627 0.5536 5.59e-15 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
8 2me6:A 71 56 0.5172 0.4225 0.5357 1.40e-14
9 1zq3:P 68 58 0.4828 0.4118 0.4828 8.68e-14
10 2h1k:B 60 56 0.4483 0.4333 0.4643 2.67e-12 2h1k:A
11 8eml:A 58 55 0.4655 0.4655 0.4909 5.03e-12 8eml:B
12 1b72:A 68 53 0.4655 0.3971 0.5094 7.02e-12
13 6es3:K 72 55 0.4310 0.3472 0.4545 1.13e-10 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
14 1ahd:P 68 57 0.4483 0.3824 0.4561 1.47e-10
15 6m3d:C 108 55 0.4310 0.2315 0.4545 1.73e-10 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
16 6m3d:C 108 48 0.3793 0.2037 0.4583 8.40e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
17 4rbo:A 55 52 0.4138 0.4364 0.4615 2.04e-10 4rbo:D
18 1puf:A 77 56 0.4655 0.3506 0.4821 2.04e-10 2lp0:A
19 1jgg:A 57 53 0.3966 0.4035 0.4340 2.16e-10 1jgg:B
20 5zjr:A 64 56 0.5000 0.4531 0.5179 3.22e-10 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
21 2r5z:A 75 53 0.4310 0.3333 0.4717 8.81e-10 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
22 5eea:G 63 56 0.3621 0.3333 0.3750 8.81e-10 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
23 2ld5:A 67 56 0.3793 0.3284 0.3929 9.04e-10
24 4uus:A 67 53 0.4138 0.3582 0.4528 1.21e-09 4uus:E
25 4cyc:A 66 50 0.3966 0.3485 0.4600 2.85e-09 1b8i:A
26 3cmy:A 60 54 0.3966 0.3833 0.4259 3.99e-09
27 1fjl:A 65 52 0.3793 0.3385 0.4231 1.13e-08 1fjl:B, 1fjl:C
28 2lkx:A 68 54 0.3621 0.3088 0.3889 9.32e-08
29 3a01:F 61 54 0.3621 0.3443 0.3889 1.06e-07 3a01:B, 3lnq:A
30 8osb:E 62 53 0.3793 0.3548 0.4151 1.61e-07
31 8ejo:A 56 52 0.2931 0.3036 0.3269 2.54e-06 8ejo:B, 8ejp:A, 8ejp:B
32 4qtr:C 57 53 0.3966 0.4035 0.4340 3.48e-06 4qtr:A, 4qtr:B, 4qtr:D
33 6e8c:A 135 56 0.3621 0.1556 0.3750 3.17e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 50 0.2414 0.1037 0.2800 0.012 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 5hod:A 61 58 0.3448 0.3279 0.3448 4.87e-05 5hod:D
36 1le8:A 53 48 0.2931 0.3208 0.3542 4.99e-05 1akh:A, 1yrn:A
37 9b8u:B 66 50 0.2759 0.2424 0.3200 1.57e-04 9b8u:A, 9b8u:C, 9b8u:D
38 4egc:A 539 60 0.3621 0.0390 0.3500 4.39e-04
39 5wc9:A 136 55 0.3621 0.1544 0.3818 0.002 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
40 7xrc:C 134 42 0.3103 0.1343 0.4286 0.036 2xsd:C
41 1gt0:C 137 57 0.2931 0.1241 0.2982 0.052 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
42 8ik5:C 67 56 0.2759 0.2388 0.2857 0.31 8ike:C, 8ilw:C
43 8bx1:A 127 44 0.2586 0.1181 0.3409 0.62
44 3d1n:I 150 53 0.2586 0.1000 0.2830 0.69 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
45 3l1p:A 147 44 0.2586 0.1020 0.3409 1.1 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
46 1lfu:P 82 29 0.1897 0.1341 0.3793 1.4 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
47 6ts2:D 1123 54 0.2759 0.0142 0.2963 1.5 6ts2:A, 6ts2:B, 6ts2:C
48 7nsn:A 1371 38 0.2414 0.0102 0.3684 2.0 7nsn:B
49 1akh:B 78 53 0.2931 0.2179 0.3208 2.1 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
50 1mnm:C 77 53 0.2931 0.2208 0.3208 2.3 1mnm:D
51 8g8e:X 140 42 0.2586 0.1071 0.3571 3.2 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
52 3baz:A 311 22 0.2069 0.0386 0.5455 3.3
53 4d82:B 274 30 0.1724 0.0365 0.3333 3.4 4d81:A, 4d82:A, 4d82:C
54 8ix8:A 264 26 0.1897 0.0417 0.4231 4.2 8ixx:A, 8iy4:A
55 8ek9:A 266 42 0.2414 0.0526 0.3333 4.6
56 4xrm:B 64 29 0.2241 0.2031 0.4483 6.7 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218