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BioLiP
>protein
GRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rkq:A 58 57 1.0000 0.9828 1.0000 5.15e-36 3rkq:B
2 5flv:M 229 51 0.8947 0.2227 1.0000 8.89e-30 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
3 1nk2:P 77 56 0.7368 0.5455 0.7500 2.86e-26 1nk3:P
4 1ig7:A 58 55 0.5789 0.5690 0.6000 1.04e-17
5 3a01:A 78 55 0.5614 0.4103 0.5818 8.81e-17 3a01:E
6 4rdu:D 62 54 0.5439 0.5000 0.5741 8.86e-17 4rdu:A, 4xrs:I, 4xrs:G
7 8pna:A 67 54 0.5263 0.4478 0.5556 7.14e-15 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
8 2me6:A 71 54 0.5088 0.4085 0.5370 1.66e-14
9 1zq3:P 68 54 0.4737 0.3971 0.5000 1.96e-13
10 2h1k:B 60 54 0.4386 0.4167 0.4630 4.69e-12 2h1k:A
11 8eml:A 58 53 0.4561 0.4483 0.4906 1.82e-11 8eml:B
12 1b72:A 68 51 0.4561 0.3824 0.5098 2.18e-11
13 6es3:K 72 53 0.4386 0.3472 0.4717 1.44e-10 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
14 6m3d:C 108 53 0.4211 0.2222 0.4528 2.43e-10 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
15 6m3d:C 108 48 0.3860 0.2037 0.4583 7.90e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
16 1ahd:P 68 55 0.4386 0.3676 0.4545 2.47e-10
17 1puf:A 77 54 0.4561 0.3377 0.4815 5.48e-10 2lp0:A
18 4rbo:A 55 51 0.4035 0.4182 0.4510 7.89e-10 4rbo:D
19 1jgg:A 57 52 0.3860 0.3860 0.4231 8.34e-10 1jgg:B
20 5zjr:A 64 55 0.4912 0.4375 0.5091 1.08e-09 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
21 2r5z:A 75 51 0.4211 0.3200 0.4706 1.78e-09 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
22 4uus:A 67 51 0.4035 0.3433 0.4510 2.13e-09 4uus:E
23 5eea:G 63 54 0.3509 0.3175 0.3704 2.56e-09 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
24 2ld5:A 67 54 0.3684 0.3134 0.3889 2.77e-09
25 3cmy:A 60 54 0.4035 0.3833 0.4259 3.96e-09
26 4cyc:A 66 52 0.4035 0.3485 0.4423 5.51e-09 1b8i:A
27 1fjl:A 65 52 0.3860 0.3385 0.4231 1.12e-08 1fjl:B, 1fjl:C
28 2lkx:A 68 54 0.3684 0.3088 0.3889 8.67e-08
29 3a01:F 61 54 0.3684 0.3443 0.3889 1.04e-07 3a01:B, 3lnq:A
30 8osb:E 62 53 0.3860 0.3548 0.4151 1.48e-07
31 8ejo:A 56 52 0.2982 0.3036 0.3269 2.47e-06 8ejo:B, 8ejp:A, 8ejp:B
32 4qtr:C 57 51 0.3860 0.3860 0.4314 5.73e-06 4qtr:A, 4qtr:B, 4qtr:D
33 6e8c:A 135 56 0.3684 0.1556 0.3750 2.83e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 50 0.2456 0.1037 0.2800 0.012 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 5hod:A 61 56 0.3333 0.3115 0.3393 1.57e-04 5hod:D
36 9b8u:B 66 50 0.2807 0.2424 0.3200 1.58e-04 9b8u:A, 9b8u:C, 9b8u:D
37 1le8:A 53 47 0.2807 0.3019 0.3404 1.82e-04 1akh:A, 1yrn:A
38 4egc:A 539 58 0.3684 0.0390 0.3621 6.31e-04
39 5wc9:A 136 51 0.3509 0.1471 0.3922 0.005 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
40 7xrc:C 134 40 0.2982 0.1269 0.4250 0.099 2xsd:C
41 1gt0:C 137 55 0.2807 0.1168 0.2909 0.14 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
42 3d1n:I 150 53 0.2632 0.1000 0.2830 0.66 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
43 8ik5:C 67 54 0.2632 0.2239 0.2778 0.78 8ike:C, 8ilw:C
44 1lfu:P 82 29 0.1930 0.1341 0.3793 1.3 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
45 6ts2:D 1123 54 0.2807 0.0142 0.2963 1.5 6ts2:A, 6ts2:B, 6ts2:C
46 7nsn:A 1371 38 0.2456 0.0102 0.3684 1.8 7nsn:B
47 8bx1:A 127 43 0.2456 0.1102 0.3256 2.3
48 4d82:B 274 30 0.1754 0.0365 0.3333 2.7 4d81:A, 4d82:A, 4d82:C
49 3baz:A 311 22 0.2105 0.0386 0.5455 3.2
50 3l1p:A 147 43 0.2456 0.0952 0.3256 3.5 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
51 8ix8:A 264 26 0.1930 0.0417 0.4231 4.0 8ixx:A, 8iy4:A
52 8ek9:A 266 42 0.2456 0.0526 0.3333 4.2
53 4xrm:B 64 29 0.2281 0.2031 0.4483 5.9 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
54 1akh:B 78 51 0.2807 0.2051 0.3137 6.3 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
55 1mnm:C 77 51 0.2807 0.2078 0.3137 7.2 1mnm:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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