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BioLiP
>protein
GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQAIKELNE

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4uus:A 67 65 1.0000 0.9701 1.0000 3.25e-42 4uus:E
2 4cyc:A 66 61 0.9077 0.8939 0.9672 1.30e-37 1b8i:A
3 1ahd:P 68 56 0.8000 0.7647 0.9286 9.87e-32
4 2r5z:A 75 55 0.7538 0.6533 0.8909 4.20e-29 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
5 1puf:A 77 54 0.6000 0.5065 0.7222 5.32e-21 2lp0:A
6 2h1k:B 60 55 0.5846 0.6333 0.6909 5.28e-20 2h1k:A
7 5zjr:A 64 57 0.5385 0.5469 0.6140 1.30e-19 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
8 8eml:A 58 55 0.5231 0.5862 0.6182 5.16e-18 8eml:B
9 1b72:A 68 54 0.5231 0.5000 0.6296 3.58e-17
10 6es3:K 72 54 0.5077 0.4583 0.6111 5.74e-17 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
11 2me6:A 71 54 0.4769 0.4366 0.5741 7.43e-16
12 1jgg:A 57 55 0.4462 0.5088 0.5273 2.10e-14 1jgg:B
13 5eea:G 63 60 0.4308 0.4444 0.4667 1.31e-13 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
14 2ld5:A 67 60 0.4308 0.4179 0.4667 1.46e-13
15 1ig7:A 58 55 0.4154 0.4655 0.4909 1.88e-12
16 3a01:A 78 55 0.3846 0.3205 0.4545 3.53e-12 3a01:E
17 4rdu:D 62 54 0.3692 0.3871 0.4444 6.67e-12 4rdu:A, 4xrs:I, 4xrs:G
18 6m3d:C 108 54 0.3846 0.2315 0.4630 6.93e-11 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
19 6m3d:C 108 48 0.3385 0.2037 0.4583 4.22e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
20 3a01:F 61 55 0.4000 0.4262 0.4727 1.45e-10 3a01:B, 3lnq:A
21 8pna:A 67 56 0.3385 0.3284 0.3929 2.66e-10 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
22 3rkq:A 58 53 0.3692 0.4138 0.4528 1.15e-09 3rkq:B
23 8osb:E 62 55 0.3846 0.4032 0.4545 1.30e-09
24 5flv:M 229 57 0.4000 0.1135 0.4561 1.33e-08 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
25 1nk2:P 77 51 0.3538 0.2987 0.4510 1.97e-08 1nk3:P
26 1zq3:P 68 49 0.3385 0.3235 0.4490 2.19e-08
27 4qtr:C 57 55 0.3538 0.4035 0.4182 3.28e-08 4qtr:A, 4qtr:B, 4qtr:D
28 1fjl:A 65 56 0.3538 0.3538 0.4107 7.29e-08 1fjl:B, 1fjl:C
29 3cmy:A 60 56 0.3385 0.3667 0.3929 3.59e-07
30 2lkx:A 68 51 0.3231 0.3088 0.4118 2.46e-06
31 4rbo:A 55 52 0.2769 0.3273 0.3462 4.68e-06 4rbo:D
32 9b8u:B 66 47 0.2769 0.2727 0.3830 1.96e-04 9b8u:A, 9b8u:C, 9b8u:D
33 8ejo:A 56 51 0.2615 0.3036 0.3333 5.02e-04 8ejo:B, 8ejp:A, 8ejp:B
34 6e8c:A 135 51 0.2923 0.1407 0.3725 0.001 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 6e8c:A 135 49 0.2462 0.1185 0.3265 0.002 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
36 1le8:A 53 42 0.2154 0.2642 0.3333 0.002 1akh:A, 1yrn:A
37 4egc:A 539 40 0.2308 0.0278 0.3750 0.002
38 1lfu:P 82 44 0.2154 0.1707 0.3182 0.005 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
39 8ik5:C 67 54 0.2615 0.2537 0.3148 0.005 8ike:C, 8ilw:C
40 3d1n:I 150 53 0.2615 0.1133 0.3208 0.016 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
41 5hod:A 61 54 0.2615 0.2787 0.3148 0.026 5hod:D
42 1gt0:C 137 45 0.2462 0.1168 0.3556 0.043 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
43 5wc9:A 136 43 0.2000 0.0956 0.3023 0.47 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
44 7xrc:C 134 43 0.2000 0.0970 0.3023 1.2 2xsd:C
45 3f98:A 377 37 0.2000 0.0345 0.3514 1.4 3f97:A, 3f97:B, 3f98:B, 3f98:C, 3f9c:A, 3f9c:B, 5i8p:A, 5i8p:B, 5i9i:A, 5i9i:B, 5jad:A, 5jah:A, 5jal:A, 5jan:A, 5jao:A, 5jap:A, 5jar:A, 5jas:A, 5jat:A, 5jau:A, 5lp1:A, 5lyy:A, 5lz2:A, 5lz4:A, 5lz5:A, 5lz7:A, 5lz8:A, 5lz9:A, 6m06:A, 6m06:B, 6m07:A, 6m07:B, 6m08:B, 5ye7:B, 5ye7:A, 5ye8:B, 5ye8:A, 5ye9:A, 5ye9:B, 5yea:A, 5yea:B
46 3l1p:A 147 25 0.1538 0.0680 0.4000 1.7 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
47 4j19:A 77 58 0.2308 0.1948 0.2586 2.0 4j19:B
48 8bx1:A 127 24 0.1538 0.0787 0.4167 2.3
49 7uv9:K 407 16 0.1385 0.0221 0.5625 2.8 4qwn:A, 4qwn:C, 4qx7:A, 4qx7:C, 4qx8:A, 4qx8:C, 4qxb:A, 4qxb:C, 4qxc:A, 4qxc:C, 4qxh:A, 4qxh:C, 4tn7:A, 4tn7:C, 7uva:A, 7uva:D, 2yu1:A, 2yu2:A
50 8g8e:X 140 25 0.1538 0.0714 0.4000 2.8 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
51 5yk6:A 239 39 0.2308 0.0628 0.3846 4.5 5yk7:C
52 1akh:B 78 46 0.2615 0.2179 0.3696 6.4 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
53 5a0u:H 795 20 0.1538 0.0126 0.5000 7.2 5a0u:A, 5a0u:B, 5a0u:C, 5a0u:D, 5a0u:E, 5a0u:F, 5a0u:G, 9f3w:A, 9f3w:B, 9f3w:C, 9f3w:D, 9f3w:E, 9f3w:F, 9f3w:G, 9f3w:H, 9f3x:A, 9f3x:B, 9f3x:C, 9f3x:D, 9f3x:E, 9f3x:F, 9f3x:G, 9f3x:H, 9f3y:A, 9f3y:B, 9f3y:C, 9f3y:D, 9f3y:E, 9f3y:F, 9f3y:G, 9f3y:H
54 3mev:B 178 47 0.1846 0.0674 0.2553 9.0 5c0m:B, 5c0m:A, 3me9:A, 3me9:B, 3mea:A, 3met:A, 3met:B, 3meu:A, 3meu:B, 3mev:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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