Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GRQGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qec:A 65 65 1.0000 1.0000 1.0000 1.14e-43 5lxu:A
2 8xas:C 63 57 0.5692 0.5873 0.6491 7.04e-24 8xas:B, 8xas:D, 8xas:A, 8xas:E, 8xas:F
3 6j5b:C 59 54 0.4308 0.4746 0.5185 8.39e-14 6j4r:A, 6j4r:D, 6j4r:B, 6j4r:C, 6j5b:A, 6j5b:D, 6j5b:F, 6j5b:H, 6j5b:J
4 7d3t:D 62 52 0.4308 0.4516 0.5385 3.79e-13 7d3t:A, 7d3t:B, 7d3t:C
5 5ahz:A 243 59 0.2462 0.0658 0.2712 0.040 5ahy:A, 1e12:A, 5g36:A, 2jaf:A, 2jag:A
6 3w81:A 616 52 0.2462 0.0260 0.3077 0.39 6i6r:A, 6i6r:B, 6i6x:A, 6i6x:B, 4kgj:B, 4kgj:A, 4kgl:B, 4kgl:A, 4kh2:B, 4kh2:A, 4obr:B, 4obr:A, 3w81:B, 3w82:A, 3w82:B
7 8xq7:A 1041 44 0.2769 0.0173 0.4091 0.57 8xq7:B
8 8pdv:A 1027 44 0.2769 0.0175 0.4091 0.74 8pd8:A, 8pd8:B, 8pd9:A, 8pdu:A, 8pdu:B
9 8otq:A 1051 44 0.2769 0.0171 0.4091 0.74 8otq:B, 8otw:B, 8xq8:A
10 8fkt:SY 378 53 0.2462 0.0423 0.3019 0.94 8fku:SY, 8fkv:SY, 8fkw:SY, 8fkx:SY, 8fky:SY
11 6ozj:B 250 47 0.2769 0.0720 0.3830 0.95 6ozj:A, 6ozk:A, 6ozk:B, 6ozl:A, 6ozl:B, 6ozm:A, 6ozm:B, 6ozn:A, 6ozn:B, 6ozo:A, 6ozo:B, 6ozp:A, 6ozp:B, 6ozq:A, 6ozq:B, 6ozr:A, 6ozr:B, 6ozs:A, 6ozs:B
12 5xbl:A 1320 55 0.2308 0.0114 0.2727 1.3
13 8k60:F 315 37 0.2000 0.0413 0.3514 3.2 8dy7:F, 8dy9:F, 8hvr:F, 8jke:F, 7vpd:F, 7vpz:F, 7x74:F, 7x75:F, 7x76:F
14 6euf:A 472 18 0.1077 0.0148 0.3889 3.9 6euf:B, 6euf:C, 6euf:D
15 5k1r:B 440 29 0.1538 0.0227 0.3448 5.7 5k1r:A
16 8cwr:B 109 37 0.1846 0.1101 0.3243 6.7 8cwt:B, 8cwt:D, 8cwt:F, 8cyf:B, 7kuf:B
17 7r89:B 529 52 0.2000 0.0246 0.2500 9.5
18 7r5s:T 112 32 0.1692 0.0982 0.3438 9.8

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218