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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GRQAGQQATVDRLRTQVTGFLSGALGKLQALSAQNMDPELAQFRVLDVDRAIMPLLIVAENARNPGLNLVPLHMDMAEDE
EVRTQPPMAGSRHIAEFVASARPGRYRAVIDDGSHTRAADIRKDASGTSVIVVDPLRKEESAYVDYADNVNMEFGEHAKC
AFIPVDIQKSSFDCRILSLSLALKMHDKDDAFAAFHETLRNGGDPSHHVSRAQQTEGATLVLDGAPLVDARMMKHGQAAS
SVSRYLGNHPEQSTVPVNKRNETLGERTTRHLVKRKVRNETKEITFSNSVEQKRIALLNRAASYVNSAPPPVVMRMAKLL
QDSLLDT

The query sequence (length=327) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5w3x:C 342 340 0.9817 0.9386 0.9441 0.0 5w3t:A, 5w3t:B, 5w3t:C, 5w3t:D, 5w3x:A, 5w3y:A, 5w3y:B, 5w3y:C, 5w3y:D, 5w40:A, 5w40:B, 5w40:C, 5w40:D
2 6be0:A 266 281 0.2355 0.2895 0.2740 7.51e-10
3 5klq:A 324 290 0.2263 0.2284 0.2552 1.57e-05 5klp:A, 5klp:B, 5klp:C, 5klq:C, 5klq:B
4 5xbl:A 1320 92 0.0703 0.0174 0.2500 0.70
5 7smh:A 257 37 0.0367 0.0467 0.3243 2.6 8g1m:A, 7smh:B, 7smh:C, 7smh:D
6 2z36:B 404 215 0.1651 0.1337 0.2512 2.7 2z36:A
7 3qhx:A 377 38 0.0428 0.0371 0.3684 3.7 3qhx:B
8 3ssn:B 350 48 0.0550 0.0514 0.3750 4.6
9 7zkq:T 351 42 0.0489 0.0456 0.3810 6.2
10 7kb1:A 428 48 0.0489 0.0374 0.3333 7.7 7kb1:B, 7kb1:C, 7kb1:D
11 1e3j:A 348 90 0.0612 0.0575 0.2222 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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