Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVI
SAVDQGKGGSQGGDKSLTHALWRDLSDRLTGFLNNITLGELVNNQEV

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4chu:B 127 127 1.0000 1.0000 1.0000 4.39e-88
2 4hf1:A 129 126 0.8976 0.8837 0.9048 5.85e-76 4chu:A, 4hf1:B, 4hf2:A, 4hf2:B
3 4cic:A 138 125 0.4094 0.3768 0.4160 9.46e-29 4cic:B
4 6hsd:A 166 68 0.2205 0.1687 0.4118 2.27e-09 6hsd:C, 6hsd:B, 6hsd:D, 6hse:A, 6hse:C, 6hse:B, 6hse:D, 6hsm:A, 6hsm:D, 6hsm:B, 6hsm:C, 6hsm:E, 6hsm:G, 6hsm:F, 6hsm:H, 6y42:A, 6y42:B, 6y45:A, 6y45:C, 6y45:B, 6y45:D
5 7b0c:A 144 85 0.1811 0.1597 0.2706 0.076 7b0c:B, 5n07:A
6 1xs9:A 129 66 0.1260 0.1240 0.2424 1.7 1bl0:A
7 6kia:C 367 38 0.0945 0.0327 0.3158 2.2
8 6g1o:A 486 50 0.1102 0.0288 0.2800 3.6
9 4eys:A 343 50 0.1339 0.0496 0.3400 3.6
10 4czc:A 305 98 0.1890 0.0787 0.2449 4.0
11 3mds:A 203 53 0.1417 0.0887 0.3396 4.8 3mds:B, 1mng:A, 1mng:B
12 3afk:A 167 36 0.0866 0.0659 0.3056 6.1 3afk:B, 3m3c:A, 3m3c:B, 3m3e:A, 3m3e:B, 3m3e:C, 3m3e:D, 3m3o:A, 3m3q:A, 3m3q:B, 2zgm:A, 2zgm:B, 2zgn:B, 2zgo:A, 2zgo:B
13 3f8f:A 114 23 0.0866 0.0965 0.4783 6.3 6do0:A, 6do0:B, 3f8c:A, 3f8f:B, 6fuu:A, 7q34:A, 7q34:B, 7q34:C, 7qz6:A, 7qz6:B, 7qz7:A, 7qz7:B, 7qz8:A, 7qz8:B, 6r1l:A, 6vwe:A, 6vwe:B, 7xuq:A, 8zf1:A
14 5x7m:A 443 44 0.1024 0.0293 0.2955 6.9 5x7m:B, 5x7n:A, 5x7n:B
15 3bwe:A 188 56 0.1417 0.0957 0.3214 7.7 6af5:A, 6af9:A, 6afa:A, 6afb:A, 6afc:A, 6afd:A, 6afe:A, 6aff:A, 6afg:A, 6afh:A, 6afi:A, 6afj:A, 6afl:A, 3bwe:C, 3bwe:D, 3bwe:E, 3bwe:F, 4mnt:A, 4n0m:A, 4p35:A, 4p36:A, 7pa2:AAA, 7pa3:AAA, 8ppw:A, 8pq0:A
16 6khn:A 490 90 0.1969 0.0510 0.2778 8.9 6khn:B, 6kho:A, 6kho:B, 6khp:A, 6khp:B
17 2heo:A 59 40 0.0945 0.2034 0.3000 9.2 2heo:D, 1j75:A
18 4r1g:B 419 54 0.1575 0.0477 0.3704 9.2 4n1x:A, 4n1x:B, 4qjg:A, 4qjg:B, 4r0q:A, 4r0q:B, 4r1g:A, 4r23:A, 4r23:B, 4r3j:A, 4r3j:B, 4ra7:A, 4ra7:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218