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BioLiP
>protein
GRKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLN
DQANTLVDLAKTQLEHH

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4j9z:B 97 97 1.0000 1.0000 1.0000 4.29e-66 6ale:B, 4g27:B, 5v02:B, 5v03:B, 5wbx:B, 5wc5:B
2 2x7f:A 276 79 0.2371 0.0833 0.2911 0.19 5ax9:B, 2x7f:D, 2x7f:E
3 6ra7:A 302 79 0.2371 0.0762 0.2911 0.21 5ax9:A, 5ax9:C, 5d7a:A, 5d7a:B, 5d7a:C, 5di1:A, 5j95:A, 4obp:A, 6ra5:A, 4rvt:A, 4u40:A, 4u42:A, 4u43:A, 4u44:A, 4u45:A, 5w5q:A, 8wm0:A, 2x7f:B, 2x7f:C, 7xzq:A, 7xzr:A, 7xzr:B, 4zk5:A, 4zp5:A
4 4obo:A 275 40 0.1237 0.0436 0.3000 0.23 4obq:A, 4u41:A, 4u42:B
5 8pmq:9 412 62 0.1753 0.0413 0.2742 4.6
6 7vnr:A 333 37 0.1031 0.0300 0.2703 9.4 7vnr:C, 7vnr:E, 7vnr:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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