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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GRKLELTKAEKHFHNFMMDTQLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLN
DQANTLVDLAKTQLE

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4j9z:B 97 95 0.9895 0.9691 0.9895 1.30e-63 6ale:B, 4g27:B, 5v02:B, 5v03:B, 5wbx:B, 5wc5:B
2 4obo:A 275 77 0.2105 0.0727 0.2597 0.24 4obq:A, 4u41:A, 4u42:B
3 2x7f:A 276 76 0.2316 0.0797 0.2895 0.25 5ax9:B, 2x7f:D, 2x7f:E
4 6ra7:A 302 76 0.2316 0.0728 0.2895 0.27 5ax9:A, 5ax9:C, 5d7a:A, 5d7a:B, 5d7a:C, 5di1:A, 5j95:A, 4obp:A, 6ra5:A, 4rvt:A, 4u40:A, 4u42:A, 4u43:A, 4u44:A, 4u45:A, 5w5q:A, 8wm0:A, 2x7f:B, 2x7f:C, 7xzq:A, 7xzr:A, 7xzr:B, 4zk5:A, 4zp5:A
5 6n20:D 501 56 0.1579 0.0299 0.2679 1.3 6b86:A, 6b86:B, 6b86:C, 6b86:D, 8fu2:A, 8fu2:B, 8fu2:C, 8fu2:D, 8fu5:A, 8fu5:B, 8fu5:C, 8fu5:D, 6n1y:A, 6n1y:B, 6n1y:C, 6n1y:D, 6n20:A, 6n20:C, 6n20:B, 6n21:A, 6n21:B, 6n21:C, 6n21:D, 8srl:A, 8srl:B, 8srl:C, 8srl:D, 7t8p:A, 7t8p:B, 7t8p:C, 7t8p:D, 7t8q:A, 7t8q:B, 7t8q:C, 7t8q:D, 5u8x:A, 5u8x:B, 5u8x:C, 5u8x:D, 5u8y:A, 5u8y:B, 5u8y:C, 5u8y:D, 5u8z:A, 5u8z:B, 5u8z:C, 5u8z:D, 5u90:A, 5u90:B, 5u90:C, 5u90:D, 5u97:A, 5u97:B, 5u97:C, 5u97:D
6 7vnr:A 333 64 0.1579 0.0450 0.2344 5.3 7vnr:C, 7vnr:E, 7vnr:G
7 7mqa:NB 103 81 0.2526 0.2330 0.2963 8.8 7mq8:NB, 7mq9:NB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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