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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GRKLELTKADTQLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLNDQANTLVDL
AKTQLEH

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4j9z:B 97 96 1.0000 0.8969 0.9062 1.47e-54 6ale:B, 4g27:B, 5v02:B, 5v03:B, 5wbx:B, 5wc5:B
2 2x7f:A 276 79 0.2644 0.0833 0.2911 0.20 5ax9:B, 2x7f:D, 2x7f:E
3 6ra7:A 302 79 0.2644 0.0762 0.2911 0.20 5ax9:A, 5ax9:C, 5d7a:A, 5d7a:B, 5d7a:C, 5di1:A, 5j95:A, 4obp:A, 6ra5:A, 4rvt:A, 4u40:A, 4u42:A, 4u43:A, 4u44:A, 4u45:A, 5w5q:A, 8wm0:A, 2x7f:B, 2x7f:C, 7xzq:A, 7xzr:A, 7xzr:B, 4zk5:A, 4zp5:A
4 4obo:A 275 71 0.2184 0.0691 0.2676 0.43 4obq:A, 4u41:A, 4u42:B
5 5sct:A 173 27 0.1264 0.0636 0.4074 0.84 2cig:A, 8cop:A, 8cop:B, 8coq:A, 8coq:B, 8cow:A, 8cow:B, 8cox:A, 8cox:B, 8cq8:A, 8cq8:B, 8cq9:A, 8cq9:B, 8cqa:A, 8cqa:B, 6ddp:A, 6ddp:B, 6ddp:C, 6ddp:D, 6dds:A, 6dds:B, 6dds:C, 6dds:D, 6ddw:A, 1df7:A, 1dg5:A, 1dg7:A, 1dg8:A, 5ja3:A, 5ja3:B, 5ja3:C, 5ja3:D, 4kl9:A, 4klx:A, 4klx:B, 4km0:A, 4km0:B, 4km2:A, 4km2:B, 4kne:A, 4kne:B, 4m2x:A, 4m2x:C, 4m2x:E, 4m2x:G, 6nnc:A, 6nnc:B, 6nnd:A, 6nnd:B, 6nne:A, 6nne:B, 6nnh:A, 6nnh:B, 6nni:A, 6nni:B, 5scm:A, 5scn:A, 5sco:A, 5scp:A, 5scp:B, 5scq:A, 5scr:A, 5scs:A, 5scu:A, 5scv:A, 5scv:B, 5scw:A, 5scx:A, 5scy:A, 5scz:A, 5sd0:A, 5sd1:A, 5sd2:A, 5sd3:A, 5sd4:A, 5sd5:A, 5u26:A, 5u27:A, 5ujf:A, 6vs5:A, 6vs5:B, 6vs6:A, 6vs6:B, 6vs8:A, 6vs8:B, 6vs9:A, 6vs9:B, 6vsd:A, 6vsd:B, 6vse:A, 6vse:B, 6vsf:A, 6vsf:B, 6vsg:A, 6vsg:B, 6vv6:A, 6vv6:B, 6vv7:A, 6vv7:B, 6vv8:A, 6vv8:B, 6vv9:A, 6vv9:B, 6vvb:A
6 8pmq:9 412 62 0.1954 0.0413 0.2742 2.9
7 7ki9:A 166 38 0.1379 0.0723 0.3158 3.7 8f80:A, 8f81:A, 8f82:A, 8f83:A, 8f84:A, 8f85:A, 7k68:A, 7k69:A, 7k6a:A, 7ki8:A, 7km7:A, 7km8:A, 7km8:B, 7km9:A, 8ta0:A, 8ta1:A, 8tbr:A, 6uwq:A, 6uww:A
8 7vnr:A 333 37 0.1149 0.0300 0.2703 8.3 7vnr:C, 7vnr:E, 7vnr:G
9 6b40:A 553 82 0.2414 0.0380 0.2561 8.5 6b40:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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