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BioLiP
>protein
GRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLG
WIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDN

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qbn:Y 119 119 1.0000 1.0000 1.0000 6.66e-87
2 7ps9:C 90 75 0.1597 0.2111 0.2533 0.075 8ou3:C, 8ou4:C, 8ou5:C
3 6tr8:A 136 100 0.2437 0.2132 0.2900 0.30
4 8wwd:A 337 40 0.0924 0.0326 0.2750 1.1 8wwd:B, 8wwd:C, 8wwd:D
5 6r1x:C 84 91 0.1933 0.2738 0.2527 2.2 5ami:C, 6r13:C
6 5amj:C 69 75 0.1429 0.2464 0.2267 3.0 8bc6:C, 8c3h:C, 5oh3:C, 8rds:C
7 2yes:B 186 54 0.1008 0.0645 0.2222 3.4 2yes:A
8 5oh7:C 82 83 0.1681 0.2439 0.2410 4.3
9 2ct1:A 77 28 0.0756 0.1169 0.3214 4.5
10 7w1m:H 322 27 0.0756 0.0280 0.3333 8.3 5k5h:A, 5k5i:A, 5k5j:A, 5k5l:E, 5k5l:G, 5k5l:F, 5kkq:A, 5kkq:D, 8ssq:A, 8ssq:D, 8ssr:A, 8ssr:D, 8sss:A, 8sss:D, 8sst:A, 8sst:D, 8ssu:A, 5t00:A, 5t00:D, 5t0u:A, 5t0u:D, 5und:A, 5und:B, 5yef:A, 5yef:B, 5yef:G, 5yef:J, 5yeg:A, 5yeg:B, 5yeh:A, 5yeh:B, 5yel:B, 5yel:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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