Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GRHVVQQQVQVLQRQASDINNTKSLPGGKLPKPVTVKLTDENGKPQTYTINRREDLMKLNGKVLSTKTTLGLEQTFRLRV
EDIGGKNYRVFYETNK

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8sx0:B 96 96 1.0000 1.0000 1.0000 2.38e-66
2 7qok:A 1361 50 0.1667 0.0118 0.3200 0.17
3 7wnh:D 316 36 0.1667 0.0506 0.4444 1.4 8cyo:A, 6dda:B, 6dda:A, 6dda:C, 6l6l:A, 6l6l:B, 6l6q:A, 6l6q:B, 7wnh:A, 7wnh:C, 7wnh:B, 5y41:A, 5y41:B, 5yd6:A, 5yd6:B, 5yd6:C, 5yd6:D
4 6vz8:F 159 50 0.1771 0.1069 0.3400 1.6 6vz8:J, 6vz8:N, 6vz8:R
5 4dr8:A 188 43 0.1667 0.0851 0.3721 2.5 4dr8:B, 4dr8:C, 4dr8:D, 4dr9:A, 4dr9:B, 4dr9:C, 4dr9:D
6 7oui:o 197 29 0.1458 0.0711 0.4828 3.3 7oui:O
7 5kbt:A 973 47 0.1979 0.0195 0.4043 5.8 5kbu:A, 5kbu:C, 4u5c:D, 4uqj:A, 4uqj:B, 4uqj:C, 4uqj:D, 6xsr:A
8 7rza:A 981 47 0.1979 0.0194 0.4043 5.8 7ryz:A, 7ryz:C, 7rza:C, 5wek:A, 5wek:C, 5wel:A, 5wel:C, 5wen:A, 5wen:C
9 5weo:A 988 47 0.1979 0.0192 0.4043 5.8 6dlz:A, 6dlz:D, 6dlz:B, 6dlz:C, 6dm0:A, 6dm0:D, 6dm0:B, 6dm0:C, 6dm1:A, 6dm1:D, 6dm1:B, 6dm1:C, 6o9g:A, 6o9g:D, 6o9g:B, 6o9g:C, 7ocf:A, 7ocf:C, 7tnj:A, 7tnj:B, 7tnj:C, 7tnj:D, 7tnk:A, 7tnk:D, 7tnk:B, 7tnk:C, 7tnl:A, 7tnl:D, 7tnl:B, 7tnl:C, 7tnm:A, 7tnm:D, 7tnm:B, 7tnm:C, 7tnn:A, 7tnn:D, 7tnn:B, 7tnn:C, 7tno:A, 7tno:D, 7tno:B, 7tno:C, 7tnp:A, 7tnp:D, 7tnp:B, 7tnp:C, 5weo:D, 5weo:B, 5weo:C
10 7rz4:A 993 47 0.1979 0.0191 0.4043 5.8 8ayl:B, 8ayl:A, 8ayl:C, 8ayl:D, 8aym:D, 8aym:B, 8ayn:B, 8ayn:C, 8ayn:A, 8ayn:D, 8ayo:A, 8ayo:D, 8ayo:C, 8ayo:B, 8c1p:A, 8c1p:B, 8c1p:C, 8c1p:D, 8c1q:A, 8c1q:B, 8c1q:C, 8c1q:D, 8c1r:A, 8c1r:B, 8c1r:C, 8c1r:D, 5kbs:A, 5kbs:B, 5kbs:C, 5kbs:D, 5kbt:B, 5kbt:C, 5kbt:D, 5kbu:B, 5kbu:D, 5kbv:A, 5kbv:B, 5kbv:C, 5kbv:D, 3kg2:A, 3kg2:B, 3kg2:C, 3kg2:D, 5l1e:A, 5l1e:B, 5l1e:C, 5l1e:D, 5l1f:A, 5l1f:B, 5l1f:C, 5l1f:D, 5l1g:A, 5l1g:C, 5l1g:D, 5l1g:B, 5l1h:A, 5l1h:B, 5l1h:C, 5l1h:D, 7ldd:B, 7ldd:D, 7lde:B, 7lde:D, 7lep:B, 7lep:D, 6njl:B, 6njl:D, 6njm:B, 6njm:D, 6njn:B, 6njn:D, 7oca:B, 7oca:D, 7ocd:A, 7ocd:C, 7ocd:D, 7ocd:B, 7oce:B, 7oce:D, 7ocf:B, 7ocf:D, 7qhb:A, 7qhb:B, 7qhb:C, 7qhb:D, 7qhh:A, 7qhh:B, 7qhh:C, 7qhh:D, 6qkc:A, 6qkc:B, 6qkc:C, 6qkc:D, 6qkz:B, 6qkz:D, 6ruq:A, 6ruq:B, 6ruq:C, 6ruq:D, 7ryy:A, 7ryy:B, 7ryy:C, 7ryy:D, 7ryz:B, 7ryz:D, 7rz4:B, 7rz4:C, 7rz4:D, 7rz5:A, 7rz5:B, 7rz5:C, 7rz5:D, 7rz6:A, 7rz6:B, 7rz6:C, 7rz6:D, 7rz7:A, 7rz7:B, 7rz7:C, 7rz7:D, 7rz8:A, 7rz8:B, 7rz8:C, 7rz8:D, 7rza:B, 7rza:D, 8ss2:A, 8ss2:B, 8ss2:C, 8ss2:D, 8ss3:A, 8ss3:B, 8ss3:C, 8ss3:D, 8ss4:A, 8ss6:A, 8ss6:B, 8ss6:C, 8ss6:D, 8ss7:A, 8ss7:B, 8ss7:C, 8ss7:D, 8ss8:A, 8ss8:B, 8ss8:C, 8ss8:D, 8ss9:A, 8ss9:B, 8ss9:C, 8ss9:D, 8ssa:A, 8ssa:B, 8ssa:C, 8ssa:D, 8ssb:A, 8ssb:B, 8ssb:C, 8ssb:D, 4u4f:A, 4u4f:B, 4u4f:C, 4u4f:D, 4u4g:A, 4u4g:B, 4u4g:C, 4u4g:D, 5vhw:A, 5vhw:B, 5vhw:C, 5vhw:D, 5vhx:A, 5vhx:B, 5vhx:C, 5vhx:D, 5vhy:A, 5vhy:B, 5vhy:C, 5vhy:D, 5vhz:A, 5vhz:B, 5vhz:C, 5vhz:D, 8vj6:A, 8vj6:B, 8vj6:C, 8vj6:D, 8vj7:A, 8vj7:B, 8vj7:C, 8vj7:D, 5wek:B, 5wek:D, 5wel:B, 5wel:D, 6xsr:D, 6xsr:B, 6xsr:C
11 3zyv:B 1262 63 0.1771 0.0135 0.2698 6.0 3zyv:A, 3zyv:C, 3zyv:D
12 7oi6:y 331 16 0.0938 0.0272 0.5625 8.6 8pk0:t

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218