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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GRGAAAAILSLGNVLNYLDRYTVAGVLLDIQQHFGVKDRGAGLLQSVFICSFMVAAPIFGYLGDRFNRKVILSCGIFFWS
AVTFSSSFIPQQYFWLLVLSRGLVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDW
HWALRVSPVLGMITGTLILILVPATSWLRDMKALIRNRSYVFSSLATSAVSFATGALGMWIPLYLHRAQVVQKTAAKDSL
IFGAITCFTGFLGVVTGAGATRWCRLKTQRADPLVCAVGMLGSAIFICLIFVAAKSSIVGAYICIFVGETLLFSNWAITA
DILMYVVIPTRRATAVALQSFTSHLLGDAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPFVVVLGGMFFLATAL
FFVSDRARAEQQVNQLA

The query sequence (length=417) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yub:R 429 422 1.0000 0.9720 0.9882 0.0 8ex4:A, 8ex6:A, 8g92:A, 8kae:R, 7yud:R
2 8jhq:A 446 442 0.9976 0.9327 0.9412 0.0
3 6e9n:A 409 161 0.0983 0.1002 0.2547 0.003 6e9o:B, 6e9o:A
4 8ufd:A 475 216 0.1223 0.1074 0.2361 0.23 8ufd:B
5 8k6l:A 547 340 0.1463 0.1115 0.1794 0.91
6 8bvt:A 508 30 0.0288 0.0236 0.4000 2.4 8bvs:A, 8bw7:A, 8sdz:A
7 8et9:A 517 122 0.0743 0.0600 0.2541 2.7
8 8kgw:A 532 140 0.0839 0.0658 0.2500 3.7
9 8jlc:A 592 103 0.0624 0.0439 0.2524 4.3 8jlh:A, 8jli:A, 8jli:B, 8js8:A, 8k77:A, 8uo9:A, 8yf1:B, 8yf1:A
10 1nu5:A 369 33 0.0336 0.0379 0.4242 5.5
11 4nef:A 239 85 0.0600 0.1046 0.2941 6.2
12 4gby:A 475 124 0.0767 0.0674 0.2581 6.4 4gbz:A, 4gc0:A
13 8hnc:A 570 361 0.1511 0.1105 0.1745 6.4 8hnd:A, 8hnh:A
14 2w4o:A 278 50 0.0312 0.0468 0.2600 6.5
15 5oxp:A 462 76 0.0528 0.0476 0.2895 7.4 7ac6:A, 4d2c:A, 5d6k:A, 5oxk:A, 4xni:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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