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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GRFSFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKTDGEPGPQGWSPRERAALQEELSDVL
IYLVALAARCRVDLPLAVLSKMDINRRRYP

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mu5:A 110 110 1.0000 1.0000 1.0000 2.92e-77 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
2 6sqw:A 114 108 0.8818 0.8509 0.8981 2.17e-68 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
3 4qgp:A 108 100 0.3182 0.3241 0.3500 3.99e-15 4qgp:B
4 2q5z:B 94 80 0.2455 0.2872 0.3375 1.51e-04 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
5 5ie9:C 95 79 0.2000 0.2316 0.2785 0.24 5ie9:A, 5ie9:B, 5ie9:D
6 7ody:C 100 34 0.1364 0.1500 0.4412 0.66 7ody:A, 7ody:B, 7ody:D
7 7jgr:D 441 80 0.2000 0.0499 0.2750 0.80 7jgs:D, 7jk2:D, 7jk3:D, 7jk4:D, 7jk5:D, 7jk6:D
8 9f2k:A 513 22 0.1000 0.0214 0.5000 1.4
9 8ecy:A 371 65 0.1545 0.0458 0.2615 1.5 8dnu:A, 8ecy:J, 8ecy:L, 8ecy:Q, 8ecy:H, 8ecy:D, 8ecy:B, 8ecy:F, 8ecy:I, 8ecy:M, 2ojw:A, 2ojw:B, 2ojw:C, 2ojw:D, 2ojw:E, 2qc8:A, 2qc8:B, 2qc8:C, 2qc8:D, 2qc8:E, 2qc8:F, 2qc8:G, 2qc8:H, 2qc8:I, 2qc8:J, 2uu7:A, 2uu7:B, 2uu7:C, 2uu7:D, 2uu7:E, 2uu7:F, 2uu7:G, 2uu7:H, 2uu7:I, 2uu7:J, 2uu7:K, 2uu7:L, 2uu7:M, 2uu7:N, 2uu7:O
10 8agd:A 1111 60 0.1818 0.0180 0.3333 1.5 8acq:A, 8acq:C, 8acq:B, 8ae1:A, 8ae1:B, 8ae1:C, 8agd:C, 8agd:B, 7zgy:A, 7zgy:C, 7zgy:B
11 7u5n:A 343 65 0.1545 0.0496 0.2615 1.7 7u5n:B, 7u5n:C, 7u5n:D, 7u5n:E, 7u5n:F, 7u5n:G, 7u5n:H, 7u5n:I, 7u5n:J
12 7d63:RZ 839 71 0.1909 0.0250 0.2958 3.0 7d4i:RZ, 7d5t:RZ, 7mqj:A
13 6h57:A 795 71 0.1909 0.0264 0.2958 3.2
14 7aju:JD 811 71 0.1909 0.0259 0.2958 3.2 6zqd:JD, 6zqe:JD, 6zqf:JD
15 6zqg:JD 829 71 0.1909 0.0253 0.2958 3.6
16 6sga:FE 434 46 0.1455 0.0369 0.3478 5.7 6sgb:FE
17 4dl8:A 224 73 0.1545 0.0759 0.2329 5.8 4dk4:A, 4dk4:B, 4dkb:A, 4dlc:A
18 3frh:A 241 32 0.1091 0.0498 0.3750 6.5 3b89:A, 3fri:A
19 5euf:B 416 35 0.1000 0.0264 0.3143 6.7 5euf:A
20 1p4r:A 589 42 0.1182 0.0221 0.3095 7.3 1p4r:B, 1pkx:A, 1pkx:C, 1pl0:A, 1pl0:B, 1pl0:C, 1pl0:D, 5uy8:A, 5uy8:B, 5uy8:C, 5uy8:D, 5uz0:A, 5uz0:B, 5uz0:C, 5uz0:D
21 4ry8:B 321 19 0.0909 0.0312 0.5263 7.9 4ry8:A, 4ry8:C, 4ry8:D
22 4u08:A 391 38 0.1182 0.0332 0.3421 9.9 4u08:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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