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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GRFDQVGGAFGWKPHKLDPKECAQVAYDGYWYKGFGCGFGAFYSIVGLMGEKYGAPYNQFPFAMLEANKGGISDWGTICG
ALYGAAATFSLFWGRKEVHPMVNELFRWYEVTKLPIFNPGDAAQGVKGDLPMSASDSVLCHISVSKWCYENKIEATSKQR
SERCGRLTADAAFKAAEIINTKIDQGKDFKSTFPMQASVSSCGECHMTKGNDANWAKGIMDCTPCHSGTAATQNKFVNHP

The query sequence (length=240) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1h21:A 240 240 1.0000 1.0000 1.0000 0.0 1h21:B, 1h21:C, 1h21:D
2 5fea:A 125 40 0.0583 0.1120 0.3500 2.4 5fea:B
3 8i3q:A 595 47 0.0583 0.0235 0.2979 2.5
4 6xmg:A 638 47 0.0583 0.0219 0.2979 3.0 6xmf:A
5 7am2:BK 694 53 0.0542 0.0187 0.2453 6.5
6 3wr9:A 416 66 0.0750 0.0433 0.2727 6.8 3wku:A, 3wku:B, 3wpm:A, 3wpm:B, 3wr3:A, 3wr3:B, 3wr4:A, 3wr4:B, 3wr8:A, 3wr8:B, 3wr9:B, 3wra:A, 3wra:B, 3wrb:A, 3wrb:B, 3wrc:A, 3wrc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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