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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GQVKEVTSLTNPIVKDIRALTQKKHRDETRSFMAEGLKLVIDALDLGWKIKTLVYPQVEQVAAKTVARGGLVLEVNEKVI
STITRRDNPQMVVGIFEQRYSPLRDIHPQEGETYVALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATM
GSVFAIPIARANTEDFIRWQRAAGVQVVATHLAGSVDYRTIDYKSKPVVLLMGNEQAGLPVELAREAGALARIPQAGRAD
SLNLAIATGIMLFEARRHLLS

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5kzk:A 262 261 1.0000 0.9962 1.0000 0.0 5kzk:B, 5l0z:A, 5l0z:B
2 4x3l:A 260 253 0.3372 0.3385 0.3478 6.08e-41 4x3l:B, 4x3m:A, 4x3m:B
3 1x7p:A 265 264 0.3218 0.3170 0.3182 4.88e-26 1x7p:B
4 7oi6:1 257 245 0.2720 0.2763 0.2898 9.85e-23 7oi6:z
5 3gyq:A 261 152 0.2069 0.2069 0.3553 6.88e-17 3gyq:B
6 7edc:A 236 148 0.1954 0.2161 0.3446 8.39e-17
7 3nk7:B 267 183 0.2031 0.1985 0.2896 6.50e-14 3nk7:A
8 1v2x:A 191 150 0.1877 0.2565 0.3267 6.55e-13
9 2ha8:A 159 147 0.1456 0.2390 0.2585 6.55e-10 2ha8:B
10 4pzk:A 159 150 0.1533 0.2516 0.2667 5.73e-05 4pzk:B
11 6yxy:EE 433 69 0.0920 0.0554 0.3478 8.48e-05 7aoi:XO, 6yxx:EE
12 7e3q:B 159 151 0.1648 0.2704 0.2848 8.06e-04
13 5co4:B 161 62 0.0996 0.1615 0.4194 0.001 5co4:A
14 6yxy:EF 302 58 0.0766 0.0662 0.3448 0.003 6yxx:EF
15 8w9u:A 152 147 0.1341 0.2303 0.2381 0.019 8w9u:B
16 4jal:A 156 82 0.0996 0.1667 0.3171 0.021 4jal:B
17 3n4k:A 163 68 0.0920 0.1472 0.3529 0.024
18 4cng:A 156 55 0.0766 0.1282 0.3636 0.053 4cnf:A, 4cng:B
19 4xbo:A 228 151 0.1571 0.1798 0.2715 0.078 4cne:A, 4cne:B, 4xbo:B
20 5gm8:B 173 169 0.1762 0.2659 0.2722 0.15 5gm8:A, 5gm8:C, 5gm8:D
21 1mxi:A 156 145 0.1418 0.2372 0.2552 0.39
22 8g6p:A 508 85 0.0920 0.0472 0.2824 0.49
23 6e4v:A 672 50 0.0575 0.0223 0.3000 2.4
24 2wtz:C 439 81 0.0843 0.0501 0.2716 2.8
25 2hae:B 373 38 0.0651 0.0456 0.4474 3.0 2hae:A, 2hae:C, 2hae:D
26 8ayr:A 677 56 0.0651 0.0251 0.3036 3.1 8ayr:B
27 4nhd:D 318 76 0.0881 0.0723 0.3026 4.0 4nhd:A, 4nhd:B, 4nhd:C
28 3owo:A 382 68 0.0805 0.0550 0.3088 4.6 3owo:B, 3owo:C, 3owo:D, 3ox4:A, 3ox4:B, 3ox4:C, 3ox4:D
29 2wtz:B 508 81 0.0843 0.0433 0.2716 4.9 2wtz:A, 2wtz:D, 2xja:A, 2xja:B, 2xja:C, 2xja:D
30 8a22:Ar 155 65 0.0805 0.1355 0.3231 5.0 8apn:Ar, 8apo:Ar
31 7xzg:A 334 26 0.0460 0.0359 0.4615 5.1 7xzg:B, 7xzg:C, 7xzg:D
32 8d1u:A 318 87 0.1073 0.0881 0.3218 5.6 5bnm:A, 5bnr:A, 5bns:A, 5bns:B, 1ebl:A, 1ebl:B, 2eft:A, 2eft:B, 2gyo:A, 1hnd:A, 1hnh:A, 1hnj:A, 1mzs:A, 6x7r:A, 4z8d:A, 4z8d:B
33 8c95:L 101 35 0.0498 0.1287 0.3714 8.9 8c93:L, 8c98:L, 8c99:L
34 6f0k:B 961 110 0.1341 0.0364 0.3182 9.2
35 8c8z:L 118 35 0.0498 0.1102 0.3714 9.5 8c8y:L, 8c90:L, 8c91:L, 8c92:L, 8c94:L, 8c96:L, 6gc6:L, 6gc7:L
36 6tor:B 404 78 0.0690 0.0446 0.2308 9.5 6tor:A
37 8a3l:k 144 35 0.0498 0.0903 0.3714 9.6 7abz:L, 7ac7:L, 7acj:L, 7acr:L, 5ady:L, 5afi:L, 5aka:L, 8akn:k, 8am9:k, 8ana:k, 8ap4:k, 9ax7:k, 9ax8:L, 8aye:k, 8b0x:k, 7b5k:L, 8b7y:T, 3bbx:L, 8bf7:I, 8bge:I, 8bgh:I, 8bh4:I, 8bhj:I, 8bhl:I, 8bhn:I, 8bhp:I, 8bil:I, 8bim:I, 7bl2:L, 7bl3:L, 7bl4:L, 7bl5:L, 7bl6:L, 6bu8:14, 7bv8:M, 6by1:CL, 6by1:DL, 6c4i:M, 8c8x:L, 8cam:k, 8ceu:k, 8cgd:k, 8cgk:k, 8cgv:k, 9cg5:k, 9cg6:k, 9cg7:k, 7cpj:L, 4csu:L, 7d6z:L, 7d80:k, 6dnc:P, 8e30:L, 8e32:L, 8e33:L, 8e35:L, 8e36:L, 8e3l:L, 8e3m:L, 8e3o:L, 8e41:L, 8e42:L, 8e43:L, 8e44:L, 8e45:L, 8e46:L, 8e47:L, 8e48:L, 8e49:L, 8eiu:k, 8ekc:N, 8emm:k, 6enf:L, 6enj:L, 6enu:L, 9fbv:k, 8fiz:BT, 8fto:k, 8fzd:N, 8fze:N, 8fzf:N, 8fzg:N, 8fzh:N, 8fzi:N, 8fzj:N, 8g2u:L, 8g31:L, 8g34:L, 8g38:L, 8g6w:k, 8g6x:k, 8g6y:k, 8g7p:N, 8g7q:N, 8g7r:N, 8g7s:N, 5gad:M, 5gae:M, 5gaf:M, 5gag:M, 5gah:M, 6gbz:L, 6gc0:L, 6gc4:L, 6gc8:L, 6gwt:L, 6gxm:L, 6gxn:L, 6gxo:L, 6gxp:L, 6h4n:L, 5h5u:M, 6h58:L, 6h58:LL, 6hrm:L, 8hsp:k, 8htz:k, 8hu1:k, 6i0y:L, 6i7v:DM, 6i7v:CM, 8ifb:k, 8ifc:k, 5iqr:L, 5it8:CM, 5it8:DM, 3iy9:L, 8j1z:k, 2j28:L, 3j5l:L, 5j5b:CM, 5j5b:DM, 3j7z:L, 5j7l:CM, 5j7l:DM, 3j8g:L, 5j88:CM, 5j88:DM, 5j8a:CM, 5j8a:DM, 3j9y:L, 3j9z:LH, 5j91:CM, 5j91:DM, 3ja1:LN, 3jbu:l, 3jbv:l, 3jcd:L, 3jce:L, 3jcj:K, 3jcn:L, 5jc9:CM, 5jc9:DM, 7jss:l, 7jsw:l, 7jsz:l, 5jte:BL, 7jt1:l, 7jt2:l, 7jt3:l, 5ju8:BL, 7k00:k, 7k50:l, 7k51:l, 7k52:l, 7k53:l, 7k54:l, 7k55:l, 5kcr:1P, 5kcs:1P, 5kps:L, 5kpv:K, 5kpw:K, 5kpx:K, 5l3p:P, 6lkq:2, 7lv0:l, 7lvk:T, 5lza:L, 5lzb:L, 5lzc:L, 5lzd:L, 5lze:L, 5lzf:L, 7m5d:L, 5mdv:L, 5mdw:L, 5mdy:L, 5mdz:L, 5mgp:L, 7n1p:LO, 7n2c:LO, 7n2u:LO, 7n2v:LO, 7n30:LO, 7n31:LO, 7nbu:k, 5nco:M, 5np6:j, 7nso:L, 7nsp:L, 7nsq:L, 5nwy:Y, 7nwt:L, 7nww:K, 7o19:BL, 7o1a:BL, 7o1c:BL, 5o2r:L, 6o9j:L, 6o9k:L, 6ofx:l, 6og7:l, 6ogf:l, 6ogg:l, 6ogi:l, 7oif:K, 7oig:K, 7oii:K, 7oiz:k, 7oj0:k, 6om6:L, 6ore:L, 6orl:L, 6osk:L, 6osq:L, 6ost:L, 6ot3:L, 7ot5:K, 7otc:L, 6ouo:L, 8p16:L, 8p17:L, 8p18:L, 7p3k:k, 6pc5:L, 6pc6:L, 6pc7:L, 6pc8:L, 6pch:L, 6pcq:L, 6pcr:L, 6pcs:L, 6pct:L, 8peg:o, 8phj:k, 6pj6:T, 7pjs:L, 7pjt:L, 7pju:L, 7pjv:L, 7pjw:L, 7pjx:L, 7pjy:L, 7pjz:L, 8pkl:o, 8pva:k, 7q4k:BL, 8q4f:k, 6q97:L, 6q98:L, 6q9a:L, 8qbt:L, 6qdw:l, 7qg8:Y, 7qgh:Y, 7qgn:Y, 7qgr:Y, 8qk7:L, 8qoa:k, 7qq3:T, 6qul:M, 8r3v:o2, 8r6c:k, 8r8m:k, 8rcl:o2, 8rcm:o2, 8rcs:o2, 8rct:o2, 8rpy:L, 8rpz:L, 8rq0:L, 8rq2:L, 6s0k:M, 7s1g:T, 7s1h:T, 7s1i:T, 7s1j:T, 7s1k:T, 7sa4:L, 7ss9:l, 7ssd:l, 7ssl:l, 7ssn:l, 7sso:l, 7ssw:l, 7st2:l, 7st6:l, 7st7:l, 8syl:N, 6szs:L, 8t5d:L, 8t5h:L, 6tbv:L151, 6tc3:L151, 7tos:L15, 4u1u:BL, 4u1u:DL, 4u1v:BL, 4u1v:DL, 4u20:BL, 4u20:DL, 4u24:BL, 4u24:DL, 4u25:BL, 4u25:DL, 4u26:BL, 4u26:DL, 4u27:BL, 4u27:DL, 5u4i:M, 6u48:CM, 5u9f:14, 5u9g:14, 7ug7:LO, 7uph:T, 8upo:u, 8upr:u, 8uql:u, 8uqm:u, 8uqp:u, 8ur0:u, 8urh:u, 8uri:u, 8urx:u, 8ury:u, 4uy8:L, 5uyk:14, 5uyl:14, 5uym:14, 5uyn:14, 5uyp:14, 5uyq:14, 4v4h:BL, 4v4h:DL, 4v4q:BL, 4v4q:DL, 4v4v:BJ, 4v4w:BJ, 4v50:BL, 4v50:DL, 4v52:BL, 4v52:DL, 4v53:BL, 4v53:DL, 4v54:BL, 4v54:DL, 4v55:BL, 4v55:DL, 4v56:BL, 4v56:DL, 4v57:BL, 4v57:DL, 4v5b:AL, 4v5b:CL, 4v5h:BL, 4v5y:BL, 4v5y:DL, 4v64:BL, 4v64:DL, 4v65:BE, 4v66:BE, 4v69:BL, 4v6c:BL, 4v6c:DL, 4v6d:BL, 4v6d:DL, 4v6e:BL, 4v6e:DL, 4v6k:AM, 4v6l:BM, 4v6m:BL, 4v6n:AN, 4v6o:BN, 4v6p:BN, 4v6q:BN, 4v6r:BN, 4v6s:AN, 4v6t:BL, 4v6v:BP, 4v6y:BL, 4v6z:BL, 4v70:BL, 4v71:BL, 4v72:BL, 4v73:BL, 4v74:BL, 4v75:BL, 4v76:BL, 4v77:BL, 4v78:BL, 4v79:BL, 4v7a:BL, 4v7b:BL, 4v7c:BN, 4v7d:AO, 4v7i:AL, 4v7s:BL, 4v7s:DL, 4v7t:BL, 4v7t:DL, 4v7u:BL, 4v7u:DL, 4v7v:BL, 4v7v:DL, 4v85:BP, 4v89:BP, 4v9c:BL, 4v9c:DL, 4v9d:CL, 4v9d:DL, 4v9o:AL, 4v9o:CL, 4v9o:EL, 4v9o:GL, 4v9p:AL, 4v9p:CL, 4v9p:EL, 4v9p:GL, 8vs9:L15, 8vsa:L15, 6vu3:u, 6vwl:J, 6vwm:J, 6vwn:J, 6vyq:u, 6vyr:u, 6vys:u, 6vyt:u, 6vyu:u, 6vyw:u, 6vyx:u, 6vyy:u, 6vyz:u, 6vz2:u, 6vz3:u, 6vz5:u, 6vz7:u, 6vzj:u, 8w51:M, 5wdt:L, 6wd0:l, 6wd1:l, 6wd2:l, 6wd3:l, 6wd4:l, 6wd5:l, 6wd6:l, 6wd7:l, 6wd8:l, 6wd9:l, 6wda:l, 6wdb:l, 6wdc:l, 6wdd:l, 6wde:l, 6wdf:l, 6wdg:l, 6wdh:l, 6wdi:l, 6wdj:l, 6wdk:l, 6wdl:l, 6wdm:l, 5we4:L, 5we6:L, 4wf1:BL, 4wf1:DL, 5wf0:L, 5wfk:L, 5wfs:L, 6wnt:l, 6wnv:l, 6wnw:l, 4woi:BL, 4woi:CL, 4www:RL, 4www:YL, 6wyv:L, 6x6t:u, 6x7f:u, 6x7k:u, 6x9q:u, 6xdq:u, 6xdr:u, 6xgf:u, 6xii:u, 6xij:u, 6xz7:L, 6xza:L2, 6xzb:L2, 6y69:L, 7y7c:k, 7y7d:k, 7y7e:k, 7y7f:k, 7y7g:k, 7y7h:k, 4ybb:CM, 4ybb:DM, 7yla:T, 6ys3:l, 6ysr:L, 6yss:L, 6yst:L, 6ysu:L, 7z20:l, 7zod:l, 7zp8:l, 7zq5:l, 7zq6:l, 6ztj:BM, 6ztl:BM, 6ztm:BM, 6ztn:BM, 6zto:BM, 6ztp:BM, 7zta:L151, 6zu1:BM
38 4phc:A 444 73 0.0843 0.0495 0.3014 9.8 4phc:B, 4phc:C, 4phc:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218