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BioLiP
>protein
GQSGSVRAIMVSSIGACLFASRFGLAPSVRKNATAAGTDLEKSVHAAGDDPGAGFTATDVLAMGAAGHAIGVGEWLAQLA
RGGV

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sl5:K 84 84 1.0000 1.0000 1.0000 3.96e-55
2 6igz:K 80 68 0.4405 0.4625 0.5441 5.63e-16
3 7dz7:K 86 75 0.5238 0.5116 0.5867 9.80e-15 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
4 8htu:K 81 72 0.4405 0.4568 0.5139 6.51e-14 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
5 8wgh:K 83 70 0.4524 0.4578 0.5429 1.92e-12
6 8j6z:K 84 73 0.4524 0.4524 0.5205 1.25e-11 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
7 7a4p:K 86 75 0.4048 0.3953 0.4533 1.59e-11 6zzx:K, 6zzy:K
8 8bcv:K 88 72 0.3929 0.3750 0.4583 4.16e-11 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
9 8cmo:K 89 83 0.4405 0.4157 0.4458 1.36e-10
10 7wfd:AK 65 72 0.3690 0.4769 0.4306 4.49e-08 7wfe:BK, 7wg5:AK, 7wg5:BK
11 6l35:G 98 74 0.3690 0.3163 0.4189 9.77e-07 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
12 7yca:K 87 73 0.3452 0.3333 0.3973 4.31e-06
13 4y28:K 57 72 0.3214 0.4737 0.3750 3.01e-05
14 8j7a:K 56 72 0.3333 0.5000 0.3889 2.11e-04
15 7yca:G 95 81 0.3214 0.2842 0.3333 0.001
16 4xk8:k 46 24 0.1786 0.3261 0.6250 0.032 4xk8:K
17 8cmo:G 93 32 0.1905 0.1720 0.5000 0.036
18 7wg5:AG 99 78 0.2976 0.2525 0.3205 0.047 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
19 7zqc:G 80 66 0.2976 0.3125 0.3788 0.049 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
20 5ve8:B 1030 26 0.1548 0.0126 0.5000 0.054 5ve8:A, 5w0v:A, 5w0v:B
21 6jo5:K 45 19 0.1667 0.3111 0.7368 0.089 8h2u:K, 6jo6:K
22 7a4p:G 99 29 0.1905 0.1616 0.5517 0.22 6zzx:G, 6zzy:G
23 7zq9:G 95 34 0.2143 0.1895 0.5294 0.22 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
24 3lw5:G 95 78 0.2976 0.2632 0.3205 0.36 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
25 6ijo:G 70 31 0.1786 0.2143 0.4839 0.43 7r3k:G
26 5zji:G 97 78 0.2976 0.2577 0.3205 0.63
27 2y4e:A 384 49 0.2143 0.0469 0.3673 1.1 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
28 8wgh:G 98 72 0.2619 0.2245 0.3056 1.3
29 8bcv:G 94 22 0.1310 0.1170 0.5000 4.1
30 7opy:F 217 28 0.1190 0.0461 0.3571 6.6 7opy:A, 7opy:B, 7opy:C, 7opz:C, 7opz:A, 7opz:B, 7opz:D
31 6zj3:SP 141 48 0.1667 0.0993 0.2917 6.8
32 8pvs:A 731 22 0.1310 0.0150 0.5000 7.2 8pvs:B
33 6ob6:B 357 31 0.1429 0.0336 0.3871 8.9
34 8tzi:A 385 31 0.1429 0.0312 0.3871 9.3 6ob6:A, 6ob7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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