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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GQSFEQWRDAFRQQALAGGIDAQTFDRAFAGVQPDPAVVEADRSQPEFTRPVWKYLEGALDPLRVRQGQARLAQHARILG
EVDARYAVDADAVVAIWGMESNYGSHMGNKNVIRSLATLAYEGRRPEFAHAQLLAALKILQHGDVPASFMIGSWAGAMGQ
TQFIPTTHNQYAVDFDGDGKRDIWGSPGDALASTANYLKASGWIAGQPWGFEVRLPAGFDYSLAELTIRKPLGEWQGMGV
QGVNGGPLPSGLSGEQASLLLPAGHRGPAFLVLHNFRAILKYNNSSAYALAVGLLADSFKGGGRIVGAWPLEDVPLSRSQ
RIELQRQLAARGHDPGAVDGIIGANTRKAIRACQQEFGWPADGYPTPALLDRLRT

The query sequence (length=375) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5anz:A 375 375 1.0000 1.0000 1.0000 0.0 5ao7:A, 5ao8:A
2 7qvd:AAA 380 373 0.4933 0.4868 0.4960 1.42e-121
3 5o8x:A 304 293 0.2480 0.3059 0.3174 7.23e-33 4anr:A, 5o8x:B
4 1d0k:A 314 253 0.2293 0.2739 0.3399 1.16e-28 1d0l:A, 1d0m:A, 1qdt:A
5 5tv7:A 158 49 0.0453 0.1076 0.3469 0.36 5tv7:B
6 6nun:A 516 122 0.0960 0.0698 0.2951 0.42
7 4q0p:A 249 71 0.0587 0.0884 0.3099 1.7 4q0q:A, 4q0s:A, 4q0u:A, 4q0v:A
8 1lbu:A 213 65 0.0613 0.1080 0.3538 1.7
9 9fmd:U 295 42 0.0400 0.0508 0.3571 6.3 8c6j:h, 6icz:Z, 6qdv:c, 7w5a:1, 7w5b:1, 5xjc:Z
10 3jb9:L 293 29 0.0320 0.0410 0.4138 7.7
11 8t4e:B 551 73 0.0427 0.0290 0.2192 9.1 8t4f:B, 8t4g:B, 8t4h:B, 8t4i:B, 8t4j:B
12 2z8r:A 583 93 0.0747 0.0480 0.3011 9.5 2z8r:B, 2z8s:A, 2z8s:B, 2zux:A, 2zux:B
13 6sj8:A 305 36 0.0320 0.0393 0.3333 9.7 6sj8:B, 6sjn:A, 6sjo:A, 6sjr:A, 6sjr:B, 6sjs:A, 6sjs:B, 6sk4:A, 6sk4:B, 6sk4:C, 6sk4:D
14 4qys:B 418 49 0.0347 0.0311 0.2653 9.9 6hte:B, 6hte:D, 4qys:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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