Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3cmy:A 60 60 1.0000 1.0000 1.0000 5.97e-38
2 1fjl:A 65 59 0.8333 0.7692 0.8475 1.14e-30 1fjl:B, 1fjl:C
3 3a01:F 61 58 0.7333 0.7213 0.7586 5.54e-28 3a01:B, 3lnq:A
4 8osb:E 62 56 0.6833 0.6613 0.7321 1.97e-26
5 2lkx:A 68 59 0.6333 0.5588 0.6441 2.91e-21
6 9b8u:B 66 51 0.5500 0.5000 0.6471 3.06e-18 9b8u:A, 9b8u:C, 9b8u:D
7 8ejo:A 56 54 0.4833 0.5179 0.5370 5.55e-15 8ejo:B, 8ejp:A, 8ejp:B
8 2me6:A 71 57 0.4500 0.3803 0.4737 1.06e-13
9 6e8c:A 135 54 0.4833 0.2148 0.5370 4.77e-13 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
10 6e8c:A 135 49 0.4167 0.1852 0.5102 1.90e-10 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
11 8pna:A 67 58 0.4167 0.3731 0.4310 5.02e-13 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
12 5hod:A 61 56 0.4333 0.4262 0.4643 1.87e-11 5hod:D
13 3a01:A 78 58 0.4167 0.3205 0.4310 2.85e-10 3a01:E
14 1ig7:A 58 54 0.4167 0.4310 0.4630 3.32e-10
15 4rdu:D 62 57 0.3667 0.3548 0.3860 5.76e-10 4rdu:A, 4xrs:I, 4xrs:G
16 8eml:A 58 57 0.4167 0.4310 0.4386 1.36e-09 8eml:B
17 2h1k:B 60 59 0.4167 0.4167 0.4237 1.37e-09 2h1k:A
18 1zq3:P 68 60 0.4167 0.3676 0.4167 2.89e-09
19 3rkq:A 58 54 0.3833 0.3966 0.4259 4.12e-09 3rkq:B
20 1jgg:A 57 57 0.4000 0.4211 0.4211 6.02e-08 1jgg:B
21 1ahd:P 68 58 0.3833 0.3382 0.3966 7.18e-08
22 2r5z:A 75 57 0.3833 0.3067 0.4035 1.07e-07 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
23 6m3d:C 108 56 0.3500 0.1944 0.3750 2.38e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
24 6m3d:C 108 53 0.3500 0.1944 0.3962 8.10e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
25 1b72:A 68 54 0.3833 0.3382 0.4259 2.72e-07
26 4uus:A 67 56 0.3667 0.3284 0.3929 3.90e-07 4uus:E
27 6es3:K 72 54 0.3833 0.3194 0.4259 4.29e-07 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
28 4qtr:C 57 54 0.3667 0.3860 0.4074 6.19e-07 4qtr:A, 4qtr:B, 4qtr:D
29 4cyc:A 66 56 0.3667 0.3333 0.3929 8.28e-07 1b8i:A
30 1nk2:P 77 53 0.3667 0.2857 0.4151 3.45e-06 1nk3:P
31 5flv:M 229 52 0.3500 0.0917 0.4038 4.52e-06 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
32 8ik5:C 67 57 0.3667 0.3284 0.3860 4.79e-06 8ike:C, 8ilw:C
33 1puf:A 77 57 0.3667 0.2857 0.3860 1.34e-05 2lp0:A
34 1lfu:P 82 62 0.3667 0.2683 0.3548 1.65e-05 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
35 5zjr:A 64 54 0.3500 0.3281 0.3889 2.05e-05 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
36 2ld5:A 67 57 0.3167 0.2836 0.3333 4.42e-05
37 3d1n:I 150 53 0.3333 0.1333 0.3774 7.12e-05 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
38 4rbo:A 55 50 0.2667 0.2909 0.3200 2.31e-04 4rbo:D
39 5eea:G 63 57 0.2833 0.2698 0.2982 2.51e-04 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
40 1le8:A 53 40 0.2500 0.2830 0.3750 6.40e-04 1akh:A, 1yrn:A
41 4j19:A 77 65 0.3500 0.2727 0.3231 0.005 4j19:B
42 8g8e:X 140 57 0.2833 0.1214 0.2982 0.017 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
43 5wc9:A 136 56 0.3333 0.1471 0.3571 0.023 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
44 8bx1:A 127 40 0.2333 0.1102 0.3500 0.058
45 3l1p:A 147 43 0.2333 0.0952 0.3256 0.065 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
46 4egc:A 539 36 0.2333 0.0260 0.3889 0.15
47 1mnm:C 77 49 0.2667 0.2078 0.3265 0.29 1mnm:D
48 1akh:B 78 49 0.2667 0.2051 0.3265 0.47 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
49 1gt0:C 137 54 0.2500 0.1095 0.2778 0.50 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
50 7xrc:C 134 40 0.2333 0.1045 0.3500 0.72 2xsd:C
51 4xrm:B 64 34 0.2500 0.2344 0.4412 1.1 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
52 6lg1:A 429 53 0.2833 0.0396 0.3208 3.8 6lg1:B
53 6xb5:A 240 38 0.2167 0.0542 0.3421 8.2 6xb5:B
54 4rgb:A 274 34 0.1833 0.0401 0.3235 10.0 4rgb:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218