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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GQQANSLLDLMTIRAFHSKILRRFSLGTAVGFRIRKGDLTDIPAILVFVARKVHKKWLNPAQCLPAILEGPGGVWCDVDV
VEFSMFSELVDKLCGSDECIGSGSQVASHETFGTLGAIVKRRTGNKQVGFLTNRHVAPNQKMFHPLPPNLGPGVYLGAVE
RADVWYGIYAGTNPETFVRADGAFIPFADDFDISTVTTVVRGVGDIGDVKVIDLQCPLNSLIGRQVCKVGRSSGHTTGTV
MAYALEYNDEKGICFFTDILVVGENRQTFDLEGDSGSLIILTSQDGEKPRPIGIIWGGRLKLTSDHGPENWTSGVDLGRL
LDRLELDIIITNESLQDAVQQQR

The query sequence (length=343) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8pme:C 343 343 1.0000 1.0000 1.0000 0.0 8pme:B
2 8pmi:B 409 371 1.0000 0.8386 0.9245 0.0 8has:A, 8has:B, 8has:C, 8has:D, 8has:E, 8has:F, 8hau:A, 8hau:B, 8hau:C, 8hau:D, 8hau:E, 8hau:F, 8pme:A, 8pmg:A, 8pmg:B, 8pmg:C, 8pmg:D, 8pmg:E, 8pmg:F, 8pmi:A, 8pmi:C, 8pmi:D, 8pmi:E, 8pmi:F, 8pml:A, 8pml:B, 8pml:C, 8pml:D, 8pml:E, 8pml:F, 8pmm:A, 8pmm:B, 8pmm:C, 8pn1:A, 8pn1:B, 8pn1:C, 8pn1:D, 8pn1:E, 8pn1:F, 8pn2:A, 8pn2:B, 8pn2:C, 8pn2:D, 8pn2:E, 8pn2:F, 7y77:A, 7y77:B, 7y77:C
3 6wkp:A 103 31 0.0379 0.1262 0.4194 1.7
4 4o2d:B 515 39 0.0379 0.0252 0.3333 3.3
5 4o2d:A 580 39 0.0379 0.0224 0.3333 3.3 4rmf:A
6 7lvz:D 246 79 0.0583 0.0813 0.2532 5.7 7lvz:A, 7lvz:B, 7lvz:C
7 5bsm:A 530 66 0.0583 0.0377 0.3030 7.3 5bsm:B, 5bsr:A, 5bst:A, 5bsu:A, 5bsv:A, 5bsw:A, 5bsw:B, 5u95:D, 5u95:B, 5u95:C
8 2alp:A 198 41 0.0321 0.0556 0.2683 9.9 1gbb:A, 1gbc:A, 1gbd:A, 1gbf:A, 1gbh:A, 1gbi:A, 1gbk:A, 1gbl:A, 1gbm:A, 2h5d:A, 2lpr:A, 3lpr:A, 5lpr:A, 6lpr:A, 7lpr:A, 8lpr:A, 9lpr:A, 3m7t:A, 3m7u:A, 1p01:A, 1p02:A, 1p03:A, 1p04:A, 1p05:A, 1p06:A, 1p10:A, 1p11:E, 1p12:E, 3pro:A, 3pro:B, 3qgj:A, 3qgj:C, 1ssx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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