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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GQMRLPSADVYRFAEPDSEENIIFEEGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEI
PEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWV
ESITKIIQRKKIANITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEIN
SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQ
KKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQ
PYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNPR

The query sequence (length=469) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8xjj:A 473 468 0.9893 0.9810 0.9915 0.0 7avi:A, 7avi:B, 7avl:A, 7avl:B, 7avs:A, 7avs:B, 7avt:A, 7avt:B, 7avu:A, 7avu:B, 7avv:A, 6bvi:B, 6bvj:B, 6bvk:B, 6bvl:B, 6bvm:B, 6cuo:B, 6cup:B, 6cur:B, 6d55:B, 6d56:B, 6d59:B, 6d5e:B, 6d5g:B, 6d5h:B, 6d5j:B, 6d5l:B, 6d5m:S, 6d5v:S, 6d5w:S, 6epm:S, 6epn:S, 6epo:S, 6epp:S, 4nyi:S, 4nyj:S, 4nym:S, 5ove:A, 5ovf:A, 5ovg:A, 5ovh:A, 5ovi:A, 6scm:A, 6sfr:A, 6sfr:B, 7uks:A, 4urz:S, 6v94:B, 6v9f:B, 6v9j:B, 6v9l:B, 6v9m:B, 6v9n:B, 6v9o:B, 5wfo:N, 5wfp:N, 5wfq:N, 5wfr:N
2 4urw:S 453 473 0.9531 0.9868 0.9450 0.0 8be6:S, 8be7:S, 8be8:S, 8be9:S, 8bea:S, 7ukr:A, 7ukr:B, 4uru:S, 4urv:S, 4urx:S, 4ury:S
3 8t5m:A 463 475 0.8102 0.8207 0.8000 0.0 8t5g:A, 8t5r:A, 8uc9:A, 8uh0:A
4 4mgz:E 632 248 0.1301 0.0965 0.2460 3.02e-19 3cf6:E, 4mgi:E, 4mgk:E, 4mgy:E, 4mh0:E
5 4l9m:A 522 458 0.2111 0.1897 0.2162 3.82e-13
6 3dls:A 285 91 0.0618 0.1018 0.3187 0.14 3dls:C, 3dls:B, 3dls:D, 3dls:E, 3dls:F
7 7v4y:A 402 35 0.0320 0.0373 0.4286 0.36
8 5gan:B 1781 63 0.0341 0.0090 0.2540 1.5 4bgd:A, 5gao:B, 5gap:B, 5nrl:B, 5zwm:D, 5zwo:D
9 6vpb:B 324 126 0.0682 0.0988 0.2540 1.9
10 6t6x:A 253 52 0.0362 0.0672 0.3269 2.0 6t6y:A, 6t6z:A, 6t70:A
11 3nzp:B 591 102 0.0576 0.0457 0.2647 2.0 3nzp:A
12 7aer:B 133 42 0.0341 0.1203 0.3810 2.5 7aer:C, 7bxo:H, 6m6v:B, 6m6v:C, 6m6v:D
13 2hf8:A 211 154 0.0746 0.1659 0.2273 3.8 2hf8:B, 2hf9:A, 2hf9:B
14 6xyw:Ai 138 43 0.0320 0.1087 0.3488 5.2
15 3g5i:A 305 38 0.0299 0.0459 0.3684 6.3 3g5i:B, 3g5i:C, 3g5i:D, 1yoe:A
16 9ash:A 753 71 0.0448 0.0279 0.2958 6.8 9asi:A, 6xn3:A, 6xn4:A, 6xn5:A, 6xn7:A
17 7k5j:I 979 106 0.0618 0.0296 0.2736 7.3 7k5j:D, 7k5j:A, 7k5j:C, 7k5j:G, 7k5j:K, 7k5j:S, 5tr4:A, 5tr4:C
18 5l6i:A 1007 106 0.0618 0.0288 0.2736 7.3 3cmm:A, 3cmm:C, 5l6h:A, 5l6h:C, 5l6i:C, 5l6j:A, 5l6j:C, 4nnj:A, 4nnj:C, 6nya:A, 6nya:D, 6zhu:A, 6zhu:E, 6zhu:C, 6zhu:G, 7zh9:A
19 7vcp:A 490 75 0.0384 0.0367 0.2400 8.9
20 6vly:A 293 26 0.0192 0.0307 0.3462 9.1 6vly:B, 6vly:C, 6vly:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218