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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GQLTLTMCLSGSVSSVAGPHMAAWLSSAGVGRLHVALTPSAQQFVTTNSLRPFVNGSVLTDETVWSAGGAPHVRIAAESD
AVVVAPATAATLGKLANGICDNIVTQIVMAAECPVILAPVMNPAMLAKPAVRRNLDALRAEGFVVAEPFRSVFAVALKSA
AE

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6jls:A 162 162 1.0000 1.0000 1.0000 3.17e-115
2 7cfu:F 175 171 0.4198 0.3886 0.3977 3.59e-34 7cfu:H, 7cfu:S, 7cfu:T, 7cfu:P, 7cfu:A, 7cfu:B, 7cfu:C, 7cfu:D, 7cfu:E, 7cfu:G, 7cfu:I, 7cfu:J, 7cfu:K, 7cfu:L, 7cfu:M, 7cfu:N, 7cfu:O, 7cfu:Q, 7cfu:R, 7cfu:U, 7cfu:V, 7cfu:W, 7cfu:X
3 1g5q:A 174 144 0.2407 0.2241 0.2708 6.95e-18 1g5q:D, 1g5q:G, 1g5q:L, 1g63:A, 1g63:B, 1g63:H, 1g63:C, 1g63:J, 1g63:D, 1g63:F, 1g63:E, 1g63:G, 1g63:I, 1g63:L, 1g63:K
4 3qjg:A 171 136 0.2593 0.2456 0.3088 5.55e-17 3qjg:C, 3qjg:B, 3qjg:D, 3qjg:E, 3qjg:F, 3qjg:G, 3qjg:I, 3qjg:H, 3qjg:J, 3qjg:L, 3qjg:K
5 1e20:A 185 125 0.2716 0.2378 0.3520 8.64e-16 1mvl:A, 1mvn:A
6 1qzu:A 160 140 0.2716 0.2750 0.3143 1.17e-14 1qzu:B, 1qzu:C, 1qzu:D
7 6tgv:C 389 77 0.2099 0.0874 0.4416 1.41e-13 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
8 6eoa:A 193 166 0.2963 0.2487 0.2892 1.65e-13
9 5h75:D 225 117 0.2346 0.1689 0.3248 2.04e-12 5h75:A, 5h75:B, 5h75:C, 1p3y:1
10 6jdd:A 176 118 0.1975 0.1818 0.2712 9.23e-06
11 6qlh:A 208 47 0.0802 0.0625 0.2766 1.3 6qli:A, 6qlj:A, 6qlk:A, 6qll:A, 6qlv:A, 6qlv:B, 6qlv:C, 6qlv:D, 6qlv:H, 6qlv:E, 6qlv:F, 6qlv:K, 6qlv:G, 6qlv:I, 6qlv:J, 6qlv:L, 4zaf:A, 4zag:A, 4zal:A, 4zan:A, 4zav:A, 4zaw:A, 4zax:A, 4zay:A, 4zaz:A, 3zqu:A
12 7d4i:RT 213 68 0.1235 0.0939 0.2941 1.4 7ajt:JJ, 7aju:JJ, 8c00:p, 8c01:p, 8cbj:h, 7d5s:RT, 7d5t:RT, 7d63:RT, 6eml:p, 6fai:h, 6ke6:RT, 6lqp:RT, 6lqq:RT, 6lqr:RT, 6lqs:RT, 6lqt:RT, 6lqu:RT, 6rbd:h, 7suk:SO, 5wlc:SO, 7wtl:CA, 7wtm:CA, 7wtn:CA, 7wto:CA, 7wtp:CA, 7wtq:CA, 7wtr:CA, 5wyj:P1, 5wyk:P1, 6y7c:h, 6zqa:JJ, 6zqb:JJ, 6zqc:JJ, 6zqd:JJ, 6zqe:JJ, 6zqf:JJ, 6zqg:JJ
13 6qlg:A 188 74 0.1111 0.0957 0.2432 1.8 6qlg:C, 6qlg:B, 6qlg:E, 6qlg:D, 6qlg:F
14 3wis:A 180 30 0.0864 0.0778 0.4667 2.4
15 6m8v:A 183 28 0.0741 0.0656 0.4286 2.4
16 5dky:A 928 25 0.0556 0.0097 0.3600 9.2 5dkz:A, 5dl0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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