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BioLiP
>protein
GQLLGLLGQAATVIGGEPTVSVEQLDFSAARGDVALQVRAPGFDVLERLRSRLSESGLAVQLGSASRDGSTVSARLVIGG

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5n7l:A 80 80 1.0000 1.0000 1.0000 4.46e-49
2 1c2n:A 116 51 0.1750 0.1207 0.2745 0.095 1c2r:A, 1c2r:B, 1vyd:A, 1vyd:B
3 3zq4:A 550 74 0.3125 0.0455 0.3378 0.68 3zq4:C, 3zq4:D, 3zq4:E
4 7shi:A 391 57 0.2750 0.0563 0.3860 1.8 7shi:B
5 4uni:A 689 24 0.1375 0.0160 0.4583 2.6 4uni:B, 4uni:C, 4uoz:A, 4uoz:B, 4uoz:C
6 7cax:D 238 28 0.1625 0.0546 0.4643 3.2 7cax:B
7 5xgv:A 461 35 0.1750 0.0304 0.4000 3.2 5xgv:B
8 4uzs:A 687 24 0.1375 0.0160 0.4583 4.2 4ucf:A, 4ucf:B, 4ucf:C, 4uzs:B
9 5uzh:A 345 35 0.1875 0.0435 0.4286 5.3
10 8ibt:A 694 24 0.1250 0.0144 0.4167 5.9 8ibs:A, 8ibs:B, 8ibs:C, 8ibs:D, 8ibs:E, 8ibs:F, 8ibt:B
11 3wd7:A 401 86 0.3000 0.0599 0.2791 6.9 7cct:A, 6l7j:A, 3wd7:B
12 4bfn:A 106 23 0.1250 0.0943 0.4348 7.4 4bfo:A, 2v8l:A, 2v8m:A, 2v8m:B, 2v8m:C, 2v8m:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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