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BioLiP
>protein
GQCLYKISSYTSYPMHDFYRCHTCNRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTL

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yrb:A 83 69 1.0000 0.7952 0.9565 3.10e-44 5vmd:A, 5vmd:C, 5vmd:B, 5vmd:D
2 8j9q:A 73 58 0.3182 0.2877 0.3621 3.51e-07 8j9q:B, 8j9q:C, 8j9r:A
3 8bja:B 1638 44 0.2273 0.0092 0.3409 5.22e-04
4 8e0q:A 1689 44 0.2273 0.0089 0.3409 5.76e-04 8d4x:A, 8e0q:B
5 8ewi:A 1775 44 0.2273 0.0085 0.3409 5.77e-04 8ewi:B, 8ewi:C, 8ewi:D
6 8d4x:B 1669 44 0.2273 0.0090 0.3409 5.99e-04 8c06:A, 8c06:D
7 8bja:A 1563 44 0.2273 0.0096 0.3409 6.42e-04
8 8p82:A 1596 44 0.2273 0.0094 0.3409 6.42e-04 8p82:B
9 7y70:A 77 49 0.3030 0.2597 0.4082 0.058 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
10 7mex:A 1737 49 0.2879 0.0109 0.3878 0.11 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
11 7wul:A 70 45 0.2727 0.2571 0.4000 1.2 7wuk:A, 7wum:A, 7wun:A
12 6k15:H 393 56 0.2424 0.0407 0.2857 1.3 6kw4:H, 6kw5:H, 6v8o:I, 6v92:I
13 7rjt:A 902 20 0.1515 0.0111 0.5000 5.2 7rjt:B, 7rjt:C, 7rjt:D, 7rk6:A, 7rk6:B, 7rk6:C, 7rk6:D, 5tj6:A
14 3zc0:B 191 40 0.1515 0.0524 0.2500 6.6 3zc0:A, 3zc0:E, 3zc0:F, 3zc0:I, 3zc0:C, 3zc0:D, 3zc0:G, 3zc0:H, 3zc0:J, 3zc0:K, 3zc0:L, 3zc1:B, 3zc1:C, 3zc1:D, 3zc1:F, 3zc1:G
15 8ibt:A 694 13 0.1061 0.0101 0.5385 6.9 8ibs:A, 8ibs:B, 8ibs:C, 8ibs:D, 8ibs:E, 8ibs:F, 8ibt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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