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BioLiP
>protein
GQALDAVRMRLAQLTHSLRRIRDEMSKAELPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESL
VTTLLRKKNIPEVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFK

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3j1o:J 159 142 0.9861 0.8931 1.0000 1.55e-102 3rj1:J, 3rj1:Q, 7ui9:h, 7uif:h, 7uig:h, 7uio:Ah, 7uio:Bh
2 5iji:A 227 55 0.1250 0.0793 0.3273 0.11 5jef:A, 5jef:B, 5jgp:A
3 7ns4:i 358 121 0.1736 0.0698 0.2066 1.3
4 5fjm:A 447 66 0.1319 0.0425 0.2879 1.7 5fjm:B, 5fjn:A, 5fjn:B
5 7ajt:UR 482 57 0.1111 0.0332 0.2807 2.1 7aju:UR, 7d4i:B8, 7d5s:B8, 7d5t:B8, 7d63:B8, 6ke6:B8, 6lqp:B8, 6lqq:B8, 6lqr:B8, 6lqs:B8, 6lqt:B8, 6lqu:B8, 6lqv:B8, 6nd4:S, 7suk:LS, 5wlc:LS, 6zqa:UR, 6zqb:UR, 6zqc:UR, 6zqd:UR
6 4g6u:A 213 55 0.1042 0.0704 0.2727 2.6
7 3dnf:B 282 65 0.1319 0.0674 0.2923 3.6 3dnf:A
8 5ccv:A 849 75 0.1667 0.0283 0.3200 4.7 6h80:A, 6h9r:A, 6izz:A
9 3w9z:A 290 88 0.1111 0.0552 0.1818 5.6
10 6zu5:SBB 80 33 0.0972 0.1750 0.4242 6.1
11 7d6v:A 601 58 0.1250 0.0300 0.3103 6.3 7d6x:A
12 2exr:A 491 117 0.2153 0.0631 0.2650 8.4 2q4w:A
13 7bzc:A 535 92 0.1528 0.0411 0.2391 8.7 7bzb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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