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BioLiP
>protein
GPVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2m13:A 65 65 1.0000 1.0000 1.0000 2.98e-45 2mke:A
2 5iz8:A 343 29 0.1385 0.0262 0.3103 1.0 5b6g:A, 7f6m:A, 7f7o:A, 8gsj:A, 5iz6:A, 5iz8:B, 5iz9:A, 5iza:A, 3nmx:A, 3nmx:B, 3nmx:C, 3qhe:A, 3qhe:C, 4yje:A, 4yjl:A, 4yjl:C, 4yjl:D, 4yjl:E, 4yjl:B, 4yjl:F, 4yk6:A, 5z8h:A
3 6mu1:A 2149 40 0.2000 0.0060 0.3250 1.1 6mu1:C, 6mu1:B, 6mu1:D
4 7u5l:A 173 39 0.2154 0.0809 0.3590 2.3 3erz:G, 3erz:J, 3erz:L, 8pp5:A, 8pp5:B, 8pp5:C, 8pp5:D, 8pp5:E, 8pp5:F, 7u5l:B, 7u5l:C, 7u5l:D, 7u5l:E, 7u5l:F, 7u5l:G, 7u5l:H, 7u5l:I, 7u5l:J, 7u5l:K, 7u5l:L, 7u5l:M, 7u5l:N, 7u5l:O, 7u5l:P, 7u5l:Q, 7u5l:R, 7u5l:S, 7u5l:T, 7u5l:U, 7u5l:V, 7u5l:W, 7u5l:X, 2z6m:A, 2z6m:C, 2z6m:E, 2z6m:B, 2z6m:D, 2z6m:F, 2z6m:G, 2z6m:I, 2z6m:K, 2z6m:J, 2z6m:L
5 8i0p:K 312 31 0.1846 0.0385 0.3871 5.4
6 7dvq:0 100 42 0.2308 0.1500 0.3571 5.9
7 6zz6:A 360 15 0.1538 0.0278 0.6667 5.9
8 8ijy:A 501 27 0.1692 0.0220 0.4074 6.9
9 5nno:A 484 18 0.1231 0.0165 0.4444 7.5 5nno:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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