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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GPVALHNVAPGTASTDAVNVGQLGAVTTGLGGGAAIDPKTGAVTAPSYTVYNADGTTSNVGNVGAAIDAINSTGIKYFHA
NSTKPDSQALGADSVAIGPNAVANNAGDVALGSGAVTSQAGGTLSETINGVTYSFAGTTPIGTVSVGAPGVERTITNVAA
GRIGQSSTDAINGSQLYGTNQSIEALTDKMNSLGNTVANTLASYNPQTGAV

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4usx:C 214 212 0.9905 0.9766 0.9858 5.86e-141 4usx:A, 4usx:B
2 6qp4:A 157 63 0.1327 0.1783 0.4444 1.74e-07
3 3s6l:D 158 99 0.1659 0.2215 0.3535 0.004 3s6l:A, 3s6l:B, 3s6l:C, 3s6l:E
4 4n4r:C 533 65 0.1043 0.0413 0.3385 7.7 4n4r:A
5 4xeq:B 304 81 0.1090 0.0757 0.2840 8.0 4xeq:A, 4xeq:C, 4xeq:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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