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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPSVHDRALGAFLGLAVGDALGATVEFMTKGEIAQQYGIHRKMTGGGWLRLKPGQITDDTEMSLALGRSLAAKGTLDVAD
ICEEFALWLKSRPVDVGNTCRRGIRRYMHEGTTTAPYSEGDAGNGAAMRCLPAALATLGHPADLEPWVLAQARITHNHPL
SDAACLTLGRMVHHLIGGRGMKACREEANRLVHQHRDFHFEPYKGQSSAYIVDTMQTVLHYYFVTDTFKSCLIQTVNQGG
DADTTGALAGMLAGATYGVDDIPSGWLSKLDMKVEREIRRQVDALLALAGL

The query sequence (length=291) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2woc:A 291 291 1.0000 1.0000 1.0000 0.0 2woc:B, 2woc:C, 2wod:A, 2wod:B, 2woe:A, 2woe:C, 2woe:B
2 3o5t:A 295 287 0.6186 0.6102 0.6272 1.15e-127 3g9d:A, 3g9d:B, 5ovo:A
3 6dre:A 365 284 0.3196 0.2548 0.3275 2.75e-39 6drh:C
4 2yzv:A 286 287 0.3574 0.3636 0.3624 3.25e-35
5 1t5j:A 301 288 0.2852 0.2757 0.2882 8.92e-31
6 6g1q:B 331 312 0.2680 0.2356 0.2500 1.70e-11 7aqm:A, 7aqm:B, 6g1p:A, 6g1p:B, 6g1q:A, 6hgz:A, 6hgz:B, 6hh3:A, 6hh3:B, 6hh4:A, 6hh4:B, 6hh5:A, 6hh5:B, 6hoz:A, 6hoz:B
7 6d3a:A 347 281 0.2337 0.1960 0.2420 4.60e-08 7akr:AAA, 7akr:BBB, 7akr:CCC, 7akr:DDD, 7aks:AAA, 7aks:CCC, 7aks:EEE, 7aks:GGG, 7arw:A, 7arw:B, 6d36:C, 6d36:D, 6d36:A, 6d36:B, 6d3a:C, 6d3a:D, 6d3a:B, 2foz:A, 2fp0:A, 2fp0:B, 2g4k:A, 7l9f:C, 7l9f:D, 7l9f:A, 7l9f:B, 7l9h:C, 7l9h:D, 7l9h:A, 7l9h:B, 7l9i:C, 7l9i:D, 7l9i:A, 7l9i:B, 2qty:A, 2qty:B, 5zqy:A
8 6g2a:A 361 348 0.2543 0.2050 0.2126 0.040 6g28:A, 3hfw:A, 6iux:A
9 6gys:B 579 82 0.0722 0.0363 0.2561 0.086 6f07:B, 6gyp:B, 6gys:C, 6gys:J, 6gys:I, 6gyu:B, 7k7g:M, 8ow1:CE
10 5v9t:B 593 43 0.0515 0.0253 0.3488 0.98 5ceh:A, 5k4l:B, 5k4l:A, 5v9p:A, 5v9t:A
11 6e4v:A 672 126 0.1100 0.0476 0.2540 1.8
12 1jbw:A 410 163 0.1340 0.0951 0.2393 2.3 1fgs:A, 1jbv:A
13 2uvf:A 571 28 0.0481 0.0245 0.5000 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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