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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPSIYNSFYVYCKGPCQRVQPGKLDVQCSTCRQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFFNCGAHPTS
DKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLI
KELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDCRKVTCEGGNGLGCGFAFCRECKEAYHEGECS
VDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV

The query sequence (length=313) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n13:B 322 322 0.9776 0.9503 0.9503 0.0 2jmo:A
2 5c1z:A 384 314 0.9297 0.7578 0.9268 0.0 4bm9:A, 5c1z:B, 5c23:A, 5c23:B, 5c9v:A, 6glc:A, 6hue:A, 6hue:B, 4i1f:A, 4i1h:A, 8ik6:C, 8ikm:A, 8ikt:A, 8ikv:C, 8ikv:A, 8jwv:A, 5n2w:A, 5n38:A, 8wzn:A, 8wzo:A
3 4zyn:B 385 310 0.8626 0.7013 0.8710 0.0 4k7d:A, 4k7d:B, 4k7d:C, 4k95:A, 4k95:B, 4k95:C, 4k95:D, 4k95:E, 4k95:F, 4k95:G, 4k95:H, 4k95:I, 4k95:J, 4k95:K, 4k95:L, 7us1:A, 8w31:A, 4zyn:A
4 8ik6:A 250 313 0.7923 0.9920 0.7923 2.72e-175
5 5caw:C 315 316 0.4665 0.4635 0.4620 2.51e-106 5caw:A
6 6djw:A 317 241 0.3706 0.3659 0.4813 1.96e-77 6djx:A
7 2m48:A 141 144 0.2556 0.5674 0.5556 4.13e-48 9c5e:A, 2lwr:A
8 7b5l:H 423 187 0.1597 0.1182 0.2674 1.42e-14 7b5n:H, 4kc9:A, 5udh:A
9 5tte:B 442 187 0.1597 0.1131 0.2674 1.51e-14 7b5m:H, 2m9y:A, 1wd2:A
10 4kbl:A 395 187 0.1629 0.1291 0.2727 1.89e-13 4kbl:B, 5udh:B
11 7od1:A 430 188 0.1629 0.1186 0.2713 2.93e-12 7od1:B
12 8eaz:A 254 221 0.1565 0.1929 0.2217 0.063 8bvl:A, 8bvl:B, 8eaz:B, 7yuj:A, 7yuj:B
13 8hzv:A 479 101 0.0863 0.0564 0.2673 0.57 8hzv:B, 8hzv:C, 8hzv:D, 8hzy:A, 8hzy:B
14 1wjv:A 79 42 0.0511 0.2025 0.3810 0.86
15 7oni:H 380 152 0.1150 0.0947 0.2368 1.1
16 4r73:A 321 51 0.0543 0.0530 0.3333 2.5 4r73:B, 4r74:A, 4r74:B, 4r74:C, 4r74:D, 4r75:A
17 8eb0:A 255 37 0.0415 0.0510 0.3514 2.8 7m4m:A, 7m4m:B, 7m4n:A, 7m4n:B, 7m4o:A
18 7uy0:A 448 41 0.0447 0.0312 0.3415 3.4 7uy0:B, 7uy3:A
19 8s4g:S 102 63 0.0543 0.1667 0.2698 8.3 9gaw:S, 2m6n:A, 7qe7:S
20 3dpg:A 338 17 0.0224 0.0207 0.4118 8.9 4c3g:A, 4c3g:B, 3dpg:B, 3dvo:A, 3dvo:B, 3dvo:C, 3dvo:D, 3dw9:A, 3dw9:B, 3mq6:A, 3mq6:B, 3mq6:C, 3mq6:D, 3mq6:E, 3mq6:F, 3mq6:G, 3mq6:H, 3mqy:A, 3mqy:B, 3n78:A, 3n78:B, 3n7b:A, 3n7b:B, 6obj:A, 6obj:B, 7s8d:A, 7s8d:B, 7ss5:A, 7ss5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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