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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GPNICTTRGVSSCQQCLAVSPMCAWCSDEALPPGSPRCDLKENLLKDNCAPESIEFPVSEARVLEDRPLSDKGSGDSSQV
TQVSPQRIALRLRPDDSKNFSIQVRQVEDGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYK
TEFDFSDYVKWKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYI
IGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLFTELQKKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGL
KSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCG
PGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCETRELY

The query sequence (length=464) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bxj:A 619 459 0.9741 0.7302 0.9847 0.0 3bn3:A, 3bqm:B, 3bqm:C, 3bqn:B, 3bqn:C, 6bxb:A, 6bxb:B, 6bxf:A, 6bxf:B, 6ckb:A, 6ckb:B, 1cqp:A, 1cqp:B, 3e2m:A, 3e2m:B, 3eob:I, 3eob:J, 3f74:C, 3f78:A, 3f78:B, 3f78:C, 3hi6:A, 3hi6:B, 2ica:A, 4ixd:A, 7kc3:C, 7kc5:A, 7kc5:C, 7kc6:C, 7kc6:A, 1lfa:A, 1lfa:B, 3m6f:A, 1mjn:A, 1mq8:B, 1mq8:D, 1mq9:A, 2o7n:A, 1rd4:A, 1rd4:B, 1rd4:C, 1rd4:D, 1t0p:A, 3tcx:B, 3tcx:D, 3tcx:F, 3tcx:H, 3tcx:J, 3tcx:L, 3tcx:N, 3tcx:P, 3tcx:R, 3tcx:T, 3tcx:V, 3tcx:X, 3tcx:Z, 3tcx:b, 1xdd:A, 1xdd:B, 1xdg:A, 1xdg:B, 1xuo:A, 1xuo:B, 1zoo:A, 1zoo:B, 1zop:A, 1zop:B
2 6bxj:A 619 59 0.0496 0.0372 0.3898 3.79e-04 3bn3:A, 3bqm:B, 3bqm:C, 3bqn:B, 3bqn:C, 6bxb:A, 6bxb:B, 6bxf:A, 6bxf:B, 6ckb:A, 6ckb:B, 1cqp:A, 1cqp:B, 3e2m:A, 3e2m:B, 3eob:I, 3eob:J, 3f74:C, 3f78:A, 3f78:B, 3f78:C, 3hi6:A, 3hi6:B, 2ica:A, 4ixd:A, 7kc3:C, 7kc5:A, 7kc5:C, 7kc6:C, 7kc6:A, 1lfa:A, 1lfa:B, 3m6f:A, 1mjn:A, 1mq8:B, 1mq8:D, 1mq9:A, 2o7n:A, 1rd4:A, 1rd4:B, 1rd4:C, 1rd4:D, 1t0p:A, 3tcx:B, 3tcx:D, 3tcx:F, 3tcx:H, 3tcx:J, 3tcx:L, 3tcx:N, 3tcx:P, 3tcx:R, 3tcx:T, 3tcx:V, 3tcx:X, 3tcx:Z, 3tcx:b, 1xdd:A, 1xdd:B, 1xdg:A, 1xdg:B, 1xuo:A, 1xuo:B, 1zoo:A, 1zoo:B, 1zop:A, 1zop:B
3 8t2v:B 718 529 0.7069 0.4568 0.6200 0.0 4cak:B, 3fcs:B, 3fcs:D, 3fcu:B, 3fcu:D, 3fcu:F, 4g1e:B, 4g1m:B, 8gcd:B, 8gce:B, 5hdb:B, 5hdb:D, 3ije:B, 7l8p:B, 7l8p:D, 7la4:B, 6mk0:B, 4mmx:B, 4mmy:B, 4mmz:B, 6msl:B, 6msu:B, 6naj:B, 3nid:B, 3nid:D, 3nif:B, 3nif:D, 3nig:B, 3nig:D, 4o02:B, 8t2u:B, 3t3m:B, 3t3m:D, 3t3p:B, 3t3p:D, 7tct:B, 7tct:D, 7td8:B, 7td8:D, 7tho:B, 7tho:D, 7tmz:B, 7tmz:D, 7tpd:B, 7tpd:D, 1tye:B, 1tye:D, 1tye:F, 7u60:B, 7u60:D, 7u9f:B, 7u9f:D, 7u9v:B, 7u9v:D, 7ubr:B, 7ubr:D, 7ucy:B, 7ucy:D, 7udg:B, 7udg:D, 7udh:B, 7udh:D, 7ue0:B, 7ue0:D, 7ufh:B, 7ufh:D, 7uh8:B, 7uh8:D, 7uje:B, 7uje:D, 7ujk:B, 7ujk:D, 7uk9:B, 7uk9:D, 7uko:B, 7uko:D, 7ukp:B, 7ukp:D, 7ukt:B, 7ukt:D, 6v4p:B, 2vc2:B, 2vdk:B, 2vdl:B, 2vdm:B, 2vdn:B, 2vdo:B, 2vdp:B, 2vdq:B, 2vdr:B, 4z7n:B, 4z7n:D, 4z7o:B, 4z7o:D, 4z7q:B, 4z7q:D, 3zdx:B, 3zdx:D, 3zdy:B, 3zdy:D, 3zdz:B, 3zdz:D, 3ze0:B, 3ze0:D, 3ze1:B, 3ze1:D, 3ze2:B, 3ze2:D
4 8t2v:B 718 59 0.0496 0.0320 0.3898 3.11e-04 4cak:B, 3fcs:B, 3fcs:D, 3fcu:B, 3fcu:D, 3fcu:F, 4g1e:B, 4g1m:B, 8gcd:B, 8gce:B, 5hdb:B, 5hdb:D, 3ije:B, 7l8p:B, 7l8p:D, 7la4:B, 6mk0:B, 4mmx:B, 4mmy:B, 4mmz:B, 6msl:B, 6msu:B, 6naj:B, 3nid:B, 3nid:D, 3nif:B, 3nif:D, 3nig:B, 3nig:D, 4o02:B, 8t2u:B, 3t3m:B, 3t3m:D, 3t3p:B, 3t3p:D, 7tct:B, 7tct:D, 7td8:B, 7td8:D, 7tho:B, 7tho:D, 7tmz:B, 7tmz:D, 7tpd:B, 7tpd:D, 1tye:B, 1tye:D, 1tye:F, 7u60:B, 7u60:D, 7u9f:B, 7u9f:D, 7u9v:B, 7u9v:D, 7ubr:B, 7ubr:D, 7ucy:B, 7ucy:D, 7udg:B, 7udg:D, 7udh:B, 7udh:D, 7ue0:B, 7ue0:D, 7ufh:B, 7ufh:D, 7uh8:B, 7uh8:D, 7uje:B, 7uje:D, 7ujk:B, 7ujk:D, 7uk9:B, 7uk9:D, 7uko:B, 7uko:D, 7ukp:B, 7ukp:D, 7ukt:B, 7ukt:D, 6v4p:B, 2vc2:B, 2vdk:B, 2vdl:B, 2vdm:B, 2vdn:B, 2vdo:B, 2vdp:B, 2vdq:B, 2vdr:B, 4z7n:B, 4z7n:D, 4z7o:B, 4z7o:D, 4z7q:B, 4z7q:D, 3zdx:B, 3zdx:D, 3zdy:B, 3zdy:D, 3zdz:B, 3zdz:D, 3ze0:B, 3ze0:D, 3ze1:B, 3ze1:D, 3ze2:B, 3ze2:D
5 1u8c:B 599 516 0.5711 0.4424 0.5136 3.05e-141 1jv2:B, 1l5g:B, 1m1x:B
6 5e6u:A 583 199 0.3944 0.3139 0.9196 1.62e-122 5e6r:A, 5e6s:A, 5e6s:C, 5e6s:E
7 4um9:D 455 464 0.2996 0.3055 0.2996 3.94e-55 5ffg:B, 5ffo:B, 5ffo:F, 5neu:B, 8tcg:B, 4um8:B, 4um8:D, 4um9:B
8 7nxd:B 690 534 0.3039 0.2043 0.2640 1.05e-53 7ceb:B, 7cec:B, 9ckv:B, 7nwl:B, 3vi3:B, 3vi3:D, 3vi4:D, 3vi4:B, 4wjk:B, 4wk0:B, 4wk2:B, 4wk4:B
9 7nxd:B 690 73 0.0603 0.0406 0.3836 8.94e-06 7ceb:B, 7cec:B, 9ckv:B, 7nwl:B, 3vi3:B, 3vi3:D, 3vi4:D, 3vi4:B, 4wjk:B, 4wk0:B, 4wk2:B, 4wk4:B
10 5es4:B 674 534 0.3233 0.2226 0.2809 1.79e-44 5e6r:B, 5e6s:B, 5e6s:D, 5e6s:F, 5e6u:B, 5es4:D, 5es4:F, 5es4:H, 3k6s:B, 3k6s:D, 3k6s:F, 3k6s:H, 3k71:B, 3k71:D, 3k71:F, 3k71:H, 3k72:B, 3k72:D, 4neh:B, 4nen:B, 7usl:B, 7usm:B
11 5es4:B 674 61 0.0539 0.0371 0.4098 5.21e-04 5e6r:B, 5e6s:B, 5e6s:D, 5e6s:F, 5e6u:B, 5es4:D, 5es4:F, 5es4:H, 3k6s:B, 3k6s:D, 3k6s:F, 3k6s:H, 3k71:B, 3k71:D, 3k71:F, 3k71:H, 3k72:B, 3k72:D, 4neh:B, 4nen:B, 7usl:B, 7usm:B
12 8zjf:B 510 524 0.2888 0.2627 0.2557 1.45e-38 3v4p:B, 3v4p:D, 3v4v:B, 3v4v:D
13 4neh:A 1084 183 0.1444 0.0618 0.3661 3.21e-30 5es4:A, 3k6s:A, 3k71:G
14 4nen:A 1063 183 0.1444 0.0630 0.3661 4.11e-30
15 7p2d:A 751 183 0.1358 0.0839 0.3443 9.30e-29 7akk:D, 7akk:H, 1bho:1, 1bho:2, 1ido:A, 1jlm:A, 1m1u:A, 3q3g:G, 3q3g:E, 3q3g:I, 3q3g:L, 3qa3:G, 3qa3:E, 3qa3:I, 3qa3:L, 6rhw:C, 8voi:A, 4xw2:A
16 6rhv:C 170 168 0.1250 0.3412 0.3452 1.83e-25
17 4cn9:A 397 189 0.1078 0.1259 0.2646 1.06e-09 4cn9:B
18 4cn9:A 397 193 0.1099 0.1285 0.2642 8.14e-07 4cn9:B
19 1aox:A 201 170 0.0970 0.2239 0.2647 6.59e-09 1aox:B, 4bj3:B, 4bj3:A, 1dzi:A, 5hj2:C, 5hj2:A, 5hj2:B, 5hj2:D, 5hj2:E, 6nd9:C, 6nd9:F, 6nd9:I, 6nd9:L, 6nd9:O, 6nd9:R, 6ndb:C, 6ndb:F, 6ndb:I, 6ndb:L, 6ndb:O, 6ndb:R, 6ndd:C, 6ndd:F, 6ndd:I, 6ndd:L, 6ndd:O, 6ndd:R, 6ndh:C, 6ndh:L, 6ndh:O, 6ndh:R, 5thp:C, 5thp:F, 5thp:I, 5thp:L, 5thp:O, 5thp:R, 1v7p:C
20 1pt6:B 195 166 0.0970 0.2308 0.2711 1.35e-06 4a0q:A, 4a0q:B, 2b2x:A, 2b2x:B, 5hgj:A, 5hgj:B, 2m32:A, 1mhp:A, 1mhp:B, 1pt6:A, 1qc5:A, 1qc5:B, 1qcy:A
21 8tcf:B 359 364 0.1616 0.2089 0.2060 6.68e-06 6om1:B, 6om1:D, 6om1:F, 6om1:H, 6om2:B, 6om2:D, 6uja:B, 6ujb:B, 6ujc:B, 8vs6:B, 8vsd:B, 7y1t:B
22 8d3d:A 1314 183 0.0841 0.0297 0.2131 1.46e-05 8d3c:A, 8d3c:B, 8d3c:C, 8d3c:D, 8d3c:E, 8d3c:F, 8d3c:G, 8d3c:H, 8d3c:I, 8d3c:J, 8d3c:K, 8d3c:L, 8d3c:M, 8d3c:N, 8d3c:O, 8d3c:P, 8d3d:B, 8d3d:C, 8d3d:D, 8d3d:E, 8d3d:F, 8d3d:G, 8d3d:H, 8d3d:I, 8d3d:J, 8d3d:K, 8d3d:L, 8d3d:M, 8d3d:N, 8d3d:O, 8d3d:P, 7f49:A, 3hxo:A, 3hxq:A, 7wn3:A, 7wn3:B, 7wn3:E, 7wn3:G, 7wn4:E, 7wn4:G, 7wn6:A, 7wn6:B, 7wn6:E, 7wn6:G, 7wpp:E, 7wpp:G, 7wpq:A, 7wpq:B, 7wpq:E, 7wpq:G, 7wpr:A, 7wpr:B, 7wpr:E, 7wpr:F, 7wpr:G, 7wpr:H, 7wpr:I, 7wpr:J, 7wpr:K, 7wpr:L, 7wpr:M, 7wpr:N, 7wpr:O, 7wpr:P, 7wpr:Q, 7wpr:R, 7wps:A, 7wps:B, 7wps:E, 7wps:G, 7wps:I, 7wps:K, 7wps:M, 7wps:O, 7wps:Q, 7wps:S, 7wps:U, 7wps:W, 7wps:Y, 7wps:a, 7wqt:A, 7wqt:B, 7wqt:E, 7wqt:F, 7wqt:G, 7wqt:H, 7wqt:I, 7wqt:J, 7wqt:K, 7wqt:L, 7wqt:M, 7wqt:N, 7wqt:O, 7wqt:P, 7wqt:Q, 7wqt:R
23 3ppv:A 184 146 0.0754 0.1902 0.2397 1.21e-04 3zqk:A, 3zqk:B, 3zqk:C
24 4oku:B 241 144 0.0797 0.1535 0.2569 0.007 4okr:A, 4okr:B, 4oku:A
25 6xqj:A 173 35 0.0302 0.0809 0.4000 0.095 6xqi:C, 6xqi:B, 6xqi:A, 6xqi:D
26 8x90:B 964 52 0.0431 0.0207 0.3846 0.64 8e59:D, 8e5a:D, 8e5b:D, 8epl:C, 8epm:C, 8fhs:D, 7mix:D, 7miy:D, 7uhf:D, 7uhg:D, 8we6:D, 8we7:D, 8we8:D, 8we9:D, 8wea:D, 8x91:B, 8x93:B
27 8if3:A 917 52 0.0431 0.0218 0.3846 0.70
28 8e56:F 973 52 0.0431 0.0206 0.3846 0.76 8e57:F, 8e58:F, 8eog:D, 8fd7:D, 5gjw:F, 6jp5:F, 6jpa:F, 6jpb:F, 7vfs:B, 7vfu:B, 7vfv:B, 7vfw:B, 7xlq:D, 7yg5:D
29 3elv:A 145 50 0.0409 0.1310 0.3800 1.1 3elv:B
30 6xtz:A 421 84 0.0539 0.0594 0.2976 1.3
31 3mx6:B 260 61 0.0345 0.0615 0.2623 1.5 3mr1:A, 3mr1:B, 3mr1:C, 3mr1:D, 3mx6:A
32 2v9k:A 467 38 0.0216 0.0214 0.2632 3.8
33 4xl1:E 229 57 0.0431 0.0873 0.3509 4.1
34 7d0j:B 734 34 0.0302 0.0191 0.4118 4.3 7a4p:B, 7bgi:B, 7blx:B, 8cmo:B, 7dz7:B, 7dz8:B, 8h2u:B, 6ijj:B, 6ijo:B, 6jo5:B, 6jo6:B, 6qph:B, 7r3k:B, 6rhz:B, 6sl5:B, 7wyi:B, 7wzn:B, 6yxr:B, 7zq9:B, 7zqc:B, 7zqd:B, 7zqd:B2, 6zzx:B, 6zzy:B
35 4wzw:A 505 51 0.0280 0.0257 0.2549 6.6
36 3maz:A 99 35 0.0280 0.1313 0.3714 7.9
37 3h5c:B 312 28 0.0237 0.0353 0.3929 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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