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BioLiP
>protein
GPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIVYFEKVGDTSLDPNDFDFTVTGR

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ogj:B 82 71 0.9859 0.8537 0.9859 4.57e-48 5bt2:A, 6c1y:A, 6c1y:B, 3c2i:A, 6ogj:A, 6ogk:A, 6yww:A
2 2moe:A 71 64 0.4930 0.4930 0.5469 1.63e-20 4lg7:A
3 3vxv:A 65 60 0.4930 0.5385 0.5833 3.46e-19 3vxx:A, 3vyb:A, 3vyq:A, 3vyq:D
4 7mwm:A 74 66 0.4507 0.4324 0.4848 5.19e-12 6c1a:A, 6c1a:B, 6c1a:E, 6c1a:F, 6c1t:A, 6c1t:D, 6c1u:A, 6c1u:B, 6c1u:E, 6c1u:F, 6c1v:A, 6c1v:B, 6c1v:E, 6c1v:F, 6c2f:A, 6c2f:D, 6c2f:G, 6c2f:J, 6c2f:M, 6c2f:P, 6cnp:A, 6cnp:B, 6cnq:A, 6cnq:B, 7mwk:A, 7mwk:B, 7mwm:B, 7ray:A
5 2ky8:A 70 62 0.4366 0.4429 0.5000 5.50e-12
6 6ccg:A 72 63 0.3944 0.3889 0.4444 1.25e-11 6cc8:A, 6cc8:B, 6ccg:B, 6ceu:A, 6ceu:B, 6cev:A, 6cev:B
7 1ig4:A 75 62 0.3803 0.3600 0.4355 6.82e-09 6d1t:A
8 7fef:A 48 46 0.2817 0.4167 0.4348 1.24e-05
9 2en7:A 44 19 0.1549 0.2500 0.5789 0.21
10 5tky:A 597 40 0.2254 0.0268 0.4000 0.81 5tky:B
11 5oyj:C 223 40 0.2394 0.0762 0.4250 1.6
12 8wwu:B 492 77 0.3380 0.0488 0.3117 2.7 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
13 5oxt:A 327 42 0.1690 0.0367 0.2857 4.4 8av5:A, 6ekw:A, 6ekx:A, 6eky:A, 6ekz:A, 6el0:A, 6el4:A, 5oxt:B, 5oxt:C, 5oxu:A, 5oy1:A, 5oy2:A, 7pn4:A, 7pn5:A, 7pn6:A, 7pn7:A, 7pn8:A, 7pn9:A, 7pna:A, 2yor:B, 2yor:A, 2yp1:A, 2yp1:B, 2yp1:C, 2yp1:D
14 2en0:A 42 19 0.1268 0.2143 0.4737 4.6
15 10mh:A 327 28 0.1690 0.0367 0.4286 6.9 2c7o:A, 2c7p:A, 2c7q:A, 2c7r:A, 5ciy:A, 3eeo:A, 1fjx:A, 1hmy:A, 2hmy:B, 2hr1:A, 2i9k:A, 1m0e:A, 1mht:A, 3mht:A, 4mht:A, 5mht:A, 6mht:A, 7mht:A, 8mht:A, 9mht:A, 1skm:A, 1svu:B, 2uyc:A, 2uyh:A, 2uz4:A, 2z6a:A, 2z6q:A, 2z6u:A, 2zcj:A
16 1svu:A 307 28 0.1690 0.0391 0.4286 7.6
17 2em1:A 44 19 0.1408 0.2273 0.5263 8.9
18 2eow:A 46 19 0.1127 0.1739 0.4211 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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