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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPMERTFSEALKNRRTYYSITDQSPIPDQEIECIINLAVRHVPSAFNSQSTRVVLLLGKSHKKLWNIVKDALRKIVPGEA
FAKTEEKIDNSFACGYGTVLFFEDQKVVKGLQEAFPSYQENFPGWSLQTSAMHQLAVWVMLEDVGFGASLQHYNPLIDDE
VRRAWNLPAHWHLIAEMPFGVPVNKPGEKEFQPLEERIKVFK

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8cqv:A 202 202 1.0000 1.0000 1.0000 2.77e-153 8cqv:B
2 1ywq:A 199 195 0.4455 0.4523 0.4615 1.22e-61
3 2ifa:B 201 197 0.4158 0.4179 0.4264 1.94e-54 2ifa:A, 2ifa:C, 2ifa:D, 2ifa:E, 2ifa:F
4 4bn9:A 191 198 0.4307 0.4555 0.4394 7.75e-49 4bn6:A, 4bn7:A, 4bn8:A, 4bnb:A, 2wqf:A
5 1zch:A 249 55 0.0891 0.0723 0.3273 0.16
6 3bem:B 210 74 0.0990 0.0952 0.2703 0.71 3bem:A
7 8dqd:A 370 68 0.1040 0.0568 0.3088 1.3 8dvw:A, 8dvz:A
8 3kwk:A 168 68 0.1040 0.1250 0.3088 2.8
9 8cqt:B 164 192 0.2030 0.2500 0.2135 4.1 8cqt:A
10 2hdc:A 97 31 0.0545 0.1134 0.3548 4.2
11 3qo8:A 441 50 0.0693 0.0317 0.2800 4.5 3qo7:A
12 3m5k:A 168 64 0.0990 0.1190 0.3125 6.8 3m5k:B
13 8avk:A 202 46 0.0594 0.0594 0.2609 7.6 8avk:B, 8avn:A, 8avn:B
14 4x6r:B 290 32 0.0545 0.0379 0.3438 8.0 3fhi:B, 4jv4:A, 5kjx:A, 5kjy:A, 5kjz:A, 7lz4:A, 7lz4:B, 7lz4:C, 7lz4:D, 7lz4:E, 7lz4:F, 7lz4:G, 7lz4:H, 4mx3:A, 4mx3:B, 1ne4:A, 1ne6:A, 3plq:A, 3pna:A, 3pna:B, 1rgs:A, 1rl3:A, 1rl3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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