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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDH
TDSKHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLRETKEQEELNDAVGFS
RVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLK
ETPFDPPKVESAEHEAGYDAYITGLCFISMANYLGSKLIEPFFNKLFLMRIPYLNLEGPDLQPKRDHVLHVTFPKEWKTS
DLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTYAEY

The query sequence (length=373) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3d45:B 373 373 1.0000 1.0000 1.0000 0.0 3ctr:A
2 3d45:A 383 391 0.9732 0.9478 0.9284 0.0 2a1r:A, 2a1r:B
3 2rok:A 100 76 0.2038 0.7600 1.0000 2.96e-50
4 2p51:A 255 289 0.1769 0.2588 0.2284 6.27e-04 3g0z:A, 3g10:A
5 4gmj:B 264 289 0.1662 0.2348 0.2145 0.011 7ax1:B, 4gmj:D, 4gmj:F
6 2n82:B 104 40 0.0429 0.1538 0.4000 1.3 2err:A, 7vrl:B
7 2l41:A 77 42 0.0322 0.1558 0.2857 2.7 2xnr:A
8 5ymx:A 202 55 0.0509 0.0941 0.3455 3.7 6h17:A, 6h35:A, 6h35:B, 6h5b:A, 6hjh:A, 6hjo:A, 6hjo:B, 6izw:A, 5ymx:B
9 2rqc:A 115 64 0.0483 0.1565 0.2812 3.8
10 8esl:A 309 67 0.0456 0.0550 0.2537 4.5 8esl:B, 8esl:C, 8esl:D
11 4nen:A 1063 28 0.0295 0.0103 0.3929 7.6
12 4neh:A 1084 28 0.0295 0.0101 0.3929 8.1 5es4:A, 3k6s:A, 3k71:G
13 3k6s:C 885 28 0.0295 0.0124 0.3929 8.4 5es4:C, 5es4:E, 5es4:G, 3k6s:E, 3k6s:G, 3k71:A, 3k71:C, 3k71:E, 3k72:A, 3k72:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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