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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPLLQRVGGLDVVKKVVELFYRKLYADPQLIKYLHDQDPMHLRAKQSMFVSWLFGPPNVPYTGKSVRIAHLRIIKQRGFS
PEDFDLGMKYFEEAMTELGAPEVLRGEVMRRMLPYKDAIFTPAAGD

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6td7:A 126 126 1.0000 1.0000 1.0000 6.00e-91
2 4xdi:A 127 119 0.3016 0.2992 0.3193 3.04e-18 6cii:A, 4xdi:B
3 2hz1:A 123 107 0.2540 0.2602 0.2991 2.25e-12 2hz2:A, 2hz3:A, 1mwb:A, 1rtx:A, 1s69:A, 1s6a:A
4 1dly:A 121 99 0.2381 0.2479 0.3030 1.33e-10 1uvx:A
5 1s56:B 135 109 0.2540 0.2370 0.2936 1.85e-10 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
6 6bme:A 127 106 0.2698 0.2677 0.3208 2.50e-10 6bme:B
7 3aq5:A 117 111 0.2381 0.2564 0.2703 2.18e-09 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
8 2ksc:A 123 109 0.2302 0.2358 0.2661 2.38e-08 4l2m:A, 4l2m:B, 4max:A, 4max:B, 4max:C
9 1dlw:A 116 103 0.1984 0.2155 0.2427 1.93e-06 1uvy:A
10 5d1v:A 121 107 0.2222 0.2314 0.2617 3.18e-05 5d1v:B
11 2bkm:A 128 114 0.2619 0.2578 0.2895 7.07e-05 2bkm:B
12 5v3u:A 131 124 0.2460 0.2366 0.2500 0.20 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
13 8hir:A 918 34 0.1111 0.0153 0.4118 0.32 8hir:B, 8hir:C, 8hir:D, 8hk6:A, 8hk6:B, 8hk6:C, 8hk6:D, 8hkf:A, 8hkf:B, 8hkf:C, 8hkf:D, 8hkk:A, 8hkk:B, 8hkk:C, 8hkk:D, 8hkm:A, 8hkm:B, 8hkm:C, 8hkm:D, 8hkq:D, 8hkq:A, 8hkq:C, 8hkq:B
14 9boh:A 402 59 0.1667 0.0522 0.3559 0.37 9boh:B, 9bow:A, 9bow:B, 9bpe:A, 9bpe:B, 2dkj:A, 2dkj:B, 8ssy:A, 8ssy:B, 8sui:B
15 3n9m:A 503 37 0.1032 0.0258 0.3514 2.4 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
16 6kik:A 275 25 0.0794 0.0364 0.4000 3.5 5dan:A, 6kiy:A, 6ky6:A, 6ky6:B
17 8art:B 393 42 0.1190 0.0382 0.3571 3.6 8art:A
18 6yxy:EM 330 42 0.1349 0.0515 0.4048 4.0
19 7bc4:B 2054 75 0.1667 0.0102 0.2800 4.1
20 2bue:A 179 36 0.1111 0.0782 0.3889 4.7 2prb:A, 2qir:A, 1v0c:A, 2vqy:A
21 3vdy:A 101 48 0.0952 0.1188 0.2500 5.5 3vdy:B
22 5tjr:D 468 97 0.2302 0.0620 0.2990 5.7 5tjr:A, 5tjr:B, 5tjr:E, 5tjr:F
23 8r5h:C 203 57 0.1349 0.0837 0.2982 8.2 6nyo:A, 8pql:C, 8q7r:C
24 8bto:A 473 56 0.1270 0.0338 0.2857 8.3 8bto:B, 8bto:C, 8bto:D, 8bto:E, 8bto:F, 8bto:G, 8bto:H, 8bto:I, 8bto:J, 8bto:K, 8bto:L, 8btp:A, 8btp:B, 8btp:C, 8btp:D, 8btp:E, 8btp:F, 8btp:G, 8btp:H, 8btp:I, 8btp:J, 8btp:K, 8btp:L, 7uxs:B, 7uxs:A
25 7yca:B 732 21 0.0794 0.0137 0.4762 9.0
26 3c7k:C 311 22 0.0794 0.0322 0.4545 9.2 3c7k:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218