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BioLiP
>protein
GPLGSVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2fc7:A 82 61 0.9375 0.7317 0.9836 4.24e-41 6e83:B, 6e86:B
2 6ww4:B 56 55 0.2969 0.3393 0.3455 3.04e-04 6ww4:A
3 6ww3:A 60 55 0.2969 0.3167 0.3455 5.25e-04 6ww3:B
4 4xi6:A 363 58 0.2969 0.0523 0.3276 0.002 4xi7:A, 4xib:A
5 2dip:A 98 39 0.2031 0.1327 0.3333 0.56
6 2e5r:A 63 51 0.2188 0.2222 0.2745 0.71
7 5d6s:A 370 41 0.2656 0.0459 0.4146 1.9 5d6s:B, 5d6s:C, 5d6s:D, 5d6s:E
8 3ir9:A 162 47 0.2344 0.0926 0.3191 3.2 3ir9:B
9 1ici:A 256 24 0.1562 0.0391 0.4167 4.6 1ici:B, 1m2g:A, 1m2h:A, 1m2j:A, 1m2k:A, 1m2n:A, 1m2n:B, 4twi:A
10 8im5:A 66 16 0.1406 0.1364 0.5625 4.8 3b0a:E
11 6miu:A 57 42 0.2500 0.2807 0.3810 5.9 6khz:C, 6khz:D, 6miu:B, 6mj7:A, 7r1o:BBB, 7r1o:DDD, 7r1o:AAA, 7r1o:CCC, 5yp7:A, 5yp7:D, 5yp8:A, 5yp8:B, 5ypa:A, 5ypa:B, 5ypb:C, 5ypb:D, 5ype:C, 5ype:D, 5ypf:C, 5ypf:D, 5ypg:A, 5ypg:B, 5yph:A
12 8gzh:D 615 28 0.1719 0.0179 0.3929 6.6 8gzg:D
13 8syi:D 620 28 0.1719 0.0177 0.3929 6.6 8urw:D
14 8h40:E 620 28 0.1719 0.0177 0.3929 6.6
15 6beh:B 544 30 0.1875 0.0221 0.4000 6.7 6beb:A, 6bec:A, 6bec:B, 6bec:C, 6bed:A, 6bed:C, 6bee:A, 6bee:C, 6bef:A, 6bef:C, 6beh:A, 6beh:C
16 6x67:C 478 33 0.1562 0.0209 0.3030 7.4 5lme:A, 6x67:D, 6x68:C, 6x68:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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