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BioLiP
>protein
GPLGSGQCLYKISSYTSYPMHDFYRCHTCNDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTL

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yrb:A 83 73 0.9306 0.8072 0.9178 2.46e-45 5vmd:A, 5vmd:C, 5vmd:B, 5vmd:D
2 8j9q:A 73 58 0.3056 0.3014 0.3793 4.90e-08 8j9q:B, 8j9q:C, 8j9r:A
3 8bja:B 1638 44 0.2083 0.0092 0.3409 1.97e-04
4 8bja:A 1563 44 0.2083 0.0096 0.3409 2.29e-04
5 8e0q:A 1689 44 0.2083 0.0089 0.3409 2.29e-04 8d4x:A, 8e0q:B
6 8d4x:B 1669 44 0.2083 0.0090 0.3409 2.31e-04 8c06:A, 8c06:D
7 8p82:A 1596 44 0.2083 0.0094 0.3409 2.55e-04 8p82:B
8 8ewi:A 1775 44 0.2083 0.0085 0.3409 2.55e-04 8ewi:B, 8ewi:C, 8ewi:D
9 7y70:A 77 49 0.2778 0.2597 0.4082 0.17 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
10 6k15:H 393 56 0.2083 0.0382 0.2679 2.8 6kw4:H, 6kw5:H, 6v8o:I, 6v92:I
11 7bvh:A 1035 25 0.1528 0.0106 0.4400 6.2 7bve:A, 7bve:B, 7bvh:B
12 7wul:A 70 45 0.2500 0.2571 0.4000 8.0 7wuk:A, 7wum:A, 7wun:A
13 8ibt:A 694 13 0.0972 0.0101 0.5385 8.5 8ibs:A, 8ibs:B, 8ibs:C, 8ibs:D, 8ibs:E, 8ibs:F, 8ibt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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