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BioLiP
>protein
GPLGSEVVRCICEVQEENDFMIQCEECQSWQHGVCMGLLEENVPEKYTCYVCQ

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5tab:A 53 53 1.0000 1.0000 1.0000 9.83e-34
2 5tbn:A 57 48 0.8868 0.8246 0.9792 1.88e-28
3 2lv9:A 80 53 0.4151 0.2750 0.4151 2.33e-12 4l58:A
4 5tdr:A 70 48 0.3208 0.2429 0.3542 2.75e-09 5tdw:A
5 7y0i:A 56 50 0.3962 0.3750 0.4200 1.48e-07
6 8f8y:B 433 49 0.3585 0.0439 0.3878 8.64e-07 8f8y:A, 8f8z:A, 8f8z:B, 3kqi:A, 7m10:A, 3pu3:A, 3pu3:B, 3pu8:B, 3pu8:A, 3pua:A, 3pus:A, 3pus:B
7 6wxk:B 51 51 0.3208 0.3333 0.3333 1.62e-06 6wxk:A, 6wxk:C, 6wxk:D, 6wxk:E
8 3o70:A 55 47 0.3208 0.3091 0.3617 9.37e-06 3o7a:A
9 5wlf:A 60 40 0.3208 0.2833 0.4250 1.44e-05 5wle:A
10 2f6j:A 168 47 0.3774 0.1190 0.4255 1.63e-05 8ag2:A, 6aze:A, 7dmy:A, 7dn4:A, 7dn4:B, 7dn4:C, 7dn4:D, 7dn4:E, 7dn4:F, 7f5c:A, 7f5d:A, 7f5e:A, 2f6j:B, 2f6j:C, 2f6n:A, 2f6n:B, 8f6g:A, 2fsa:A, 2fsa:B, 2fsa:C, 2fuu:A, 5h6y:A, 7k6r:A, 7k6s:A, 7kdw:A, 7kdw:B, 7kdz:A, 7lp0:A, 7lp0:B, 7lpk:A, 7lpk:B, 7lrk:A, 7lrk:B, 7lro:A, 7lro:B, 6lu5:A, 6lu6:A, 7m2e:A, 8ou2:A, 8ou2:B, 3qzs:A, 3qzs:B, 3qzt:A, 3qzv:A, 5r4g:A, 5r4h:A, 5r4i:A, 5r4j:A, 5r4k:A, 5r4l:A, 5r4m:A, 5r4n:A, 2ri7:A, 7rwn:A, 7rwo:A, 7rwp:A, 7rwq:A, 7vd4:A
11 2rsd:A 68 53 0.4151 0.3235 0.4151 2.66e-05
12 9c0o:A 63 46 0.3208 0.2698 0.3696 3.05e-05
13 1wew:A 78 54 0.3962 0.2692 0.3889 3.34e-05
14 1wem:A 76 53 0.3774 0.2632 0.3774 3.70e-05 4l7x:A, 2m3h:A
15 1wep:A 79 37 0.3396 0.2278 0.4865 4.32e-05
16 5z8l:A 204 46 0.3396 0.0882 0.3913 2.35e-04 5z8n:A, 5z8n:B, 5z8n:C
17 3kv4:A 432 39 0.3019 0.0370 0.4103 3.17e-04 4do0:A, 3k3n:A, 3k3o:A, 2wwu:A
18 1wee:A 72 47 0.2642 0.1944 0.2979 8.35e-04
19 3kv6:D 448 37 0.2830 0.0335 0.4054 0.002 3kv5:D, 3kv5:A, 3kv6:A, 3kv9:A, 3kva:A, 3u78:A
20 6o7g:B 60 42 0.2830 0.2500 0.3571 0.005 8u2y:B
21 5znp:B 186 35 0.2642 0.0753 0.4000 0.008 5znp:A, 5znr:A, 5znr:B
22 6j2p:A 98 51 0.2830 0.1531 0.2941 0.013 6j2p:B, 6j2p:D, 6j2p:C
23 5yc3:A 60 59 0.3396 0.3000 0.3051 0.013 5yc4:A
24 6mlc:C 85 26 0.2075 0.1294 0.4231 0.031 6mlc:A, 6mlc:B, 6mlc:D
25 3n9m:A 503 38 0.3208 0.0338 0.4474 0.032 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
26 2k16:A 75 38 0.2075 0.1467 0.2895 0.10 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C
27 1f62:A 51 48 0.3019 0.3137 0.3333 0.20
28 2l5u:A 61 56 0.3774 0.3279 0.3571 0.23
29 3lqi:C 181 40 0.3019 0.0884 0.4000 0.24 2kyu:A, 3lqh:A, 3lqi:A, 3lqi:B, 3lqj:A, 3lqj:B, 7zey:B, 7zez:B
30 2m85:A 65 25 0.1887 0.1538 0.4000 0.40
31 8cww:P 201 41 0.2264 0.0597 0.2927 0.44
32 5b79:A 118 43 0.2264 0.1017 0.2791 1.4 5vdc:A
33 2xb1:C 97 32 0.2075 0.1134 0.3438 2.3 4up0:A, 4up5:A, 2xb1:A
34 1mm3:A 61 45 0.2642 0.2295 0.3111 2.3
35 5szb:A 115 43 0.2075 0.0957 0.2558 2.6 5i3l:A, 5i3l:B, 2kwj:A, 2kwk:A, 2kwn:A, 2kwo:A, 5szc:A
36 5y20:A 52 22 0.1509 0.1538 0.3636 2.7
37 8hgg:C 1484 33 0.1887 0.0067 0.3030 2.9 8hgg:D, 8hgh:A, 8hgh:B
38 8a7e:C 1524 33 0.1887 0.0066 0.3030 3.0 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
39 5for:A 134 46 0.2453 0.0970 0.2826 3.2
40 8odw:A 612 33 0.2075 0.0180 0.3333 3.3 8odw:B
41 1we9:A 64 43 0.2264 0.1875 0.2791 3.9
42 7t9n:R 555 17 0.1321 0.0126 0.4118 4.3
43 4q6f:A 56 43 0.2453 0.2321 0.3023 5.1 6fap:A, 6fap:B, 6fap:C, 6fap:D, 6fhu:A, 6fhu:B, 6fhu:D, 6fhu:C, 6fi0:A, 6fi0:B, 6fi0:C, 6fi0:D, 6fkp:A, 6fkp:D, 6fkp:C, 6fkp:B, 4q6f:B, 4q6f:C, 4q6f:D, 4qf2:A, 4qf2:B, 4qf2:C, 4qf2:D, 5t8r:D, 5t8r:A, 5t8r:B, 5t8r:C
44 2vp7:A 66 31 0.1887 0.1515 0.3226 5.3 2dx8:A, 2dx8:B, 2vpb:A, 2vpd:A, 2vpd:C, 2vpe:C, 2vpe:A, 2vpg:A, 2vpg:C, 2yyr:A, 2yyr:B
45 7utz:R 600 17 0.1321 0.0117 0.4118 5.3
46 4a0f:A 746 37 0.1698 0.0121 0.2432 5.5
47 2ma5:A 61 48 0.3208 0.2787 0.3542 8.3
48 2ro1:A 189 44 0.2264 0.0635 0.2727 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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