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BioLiP
>protein
GPLGSEKSLEQCKFGTHCTNKRCKYRHARSHIMCREGANCTRIDCLFGHPINEDCRFGVNCKNIYCLFRHPPGRVLPEKK

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2lhn:A 80 80 1.0000 1.0000 1.0000 7.44e-56 5l2l:A, 5l2l:B, 5l2l:F, 5l2l:E
2 4lj0:A 65 65 0.2750 0.3385 0.3385 0.002 4lj0:B
3 3zj2:A 71 28 0.1500 0.1690 0.4286 0.41
4 6bme:A 127 49 0.1875 0.1181 0.3061 3.1 6bme:B
5 3iar:A 360 28 0.1500 0.0333 0.4286 4.3 2bgn:E, 2bgn:F, 2bgn:G, 2bgn:H, 2e1w:A, 1krm:A, 1ndv:A, 1ndw:A, 1ndy:A, 1ndz:A, 1o5r:A, 1qxl:A, 7rtg:A, 7rtg:B, 1uml:A, 1v79:A, 1v7a:A, 1vfl:A, 1w1i:E, 1w1i:F, 1w1i:G, 1w1i:H, 1wxy:A, 1wxz:A, 2z7g:A
6 5xrs:G 321 19 0.1250 0.0312 0.5263 6.0 5xrs:A, 5xrs:C
7 4uny:C 330 22 0.1125 0.0273 0.4091 9.0 4unx:A, 4unx:C, 4unx:E, 4uny:A, 4uny:E, 4unz:A, 4unz:C, 4unz:E, 4uo1:A, 4uo1:C, 4uo1:E, 4uo2:A, 4uo2:C, 4uo2:E, 4uo5:A, 4uo5:C, 4uo5:E, 4uo6:A, 4uo7:A, 4uo7:C, 4uo7:E, 4uo8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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