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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPLGSDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTK

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1om2:A 95 67 0.9306 0.7053 1.0000 5.53e-43 3awr:A, 3ax2:A, 3ax2:C, 3ax5:C, 2v1s:D, 2v1s:E, 2v1t:A
2 5az7:A 434 68 0.8611 0.1429 0.9118 8.42e-26 3awr:B, 3ax2:E, 3ax2:G, 3ax3:A, 3ax3:G, 3ax3:C, 3ax3:E, 3ax5:A, 5az6:B, 5az6:A, 5az8:A, 2v1s:A, 2v1s:B, 2v1s:C, 2v1s:F, 2v1t:B
3 7d5c:A 919 56 0.2083 0.0163 0.2679 0.27
4 6fqe:B 340 25 0.1667 0.0353 0.4800 0.58 6aml:A, 6aml:G, 6b2f:A, 6b2f:G, 6bh7:G, 6bhk:A, 6bhk:G, 6bhk:B, 6bhk:E, 6bhl:A, 6bhl:G, 3cak:A, 3cak:B, 3cs2:A, 3cs2:B, 3cs2:K, 3cs2:P, 1dpm:A, 1dpm:B, 3e3h:A, 3e3h:B, 4e3t:A, 4e3t:B, 1eyw:A, 1ez2:A, 1ez2:B, 6fef:A, 6fei:A, 6fei:B, 6ffw:A, 6ffw:B, 6for:A, 6fqe:A, 6frz:A, 6frz:B, 6fs3:A, 6fs3:B, 6fu0:A, 6fu0:B, 6fu0:C, 6fu0:D, 6fu6:A, 6fu6:B, 6fvk:A, 6fvp:A, 6fw1:A, 6fwe:A, 6g0m:A, 6g1j:A, 6g23:A, 6g3l:A, 6g3m:A, 6gbj:A, 6gbk:A, 6gbk:B, 6gbl:A, 6gbl:B, 4gy0:A, 4gy0:B, 4gy1:A, 4gy1:B, 1hzy:A, 1hzy:B, 1i0b:A, 1i0b:B, 1i0d:A, 1i0d:B, 1jgm:A, 1jgm:B, 2o4m:A, 2o4m:B, 2o4m:C, 2o4m:P, 2o4q:A, 2o4q:B, 2o4q:K, 2o4q:P, 2ob3:A, 2ob3:B, 2oql:A, 2oql:B, 1p6b:A, 1p6b:B, 1p6c:A, 1p6c:B, 8p7h:A, 8p7i:A, 8p7i:B, 8p7k:A, 8p7k:B, 8p7m:A, 8p7n:A, 8p7n:B, 8p7n:C, 8p7n:D, 8p7q:A, 8p7r:A, 8p7s:A, 8p7t:A, 8p7u:A, 8p7v:A, 7p85:A, 4pbe:A, 4pbe:G, 4pbf:A, 4pbf:B, 4pcn:A, 4pcn:B, 4pcp:A, 4pcp:G, 1psc:A, 1psc:B, 1qw7:A, 1qw7:B, 3upm:A, 3upm:B, 8uqy:A, 8uqz:A, 3ur2:A, 3ur2:B, 3ur5:A, 3ur5:B, 3ura:A, 3ura:B, 3urb:A, 3urb:B, 3urn:A, 3urn:B, 3urq:A, 3urq:B, 5w6b:A, 5w6b:G, 5wcp:A, 5wcp:G, 5wcq:A, 5wcq:G, 5wcr:A, 5wcr:G, 5wcw:A, 5wcw:G, 5wiz:A, 5wiz:G, 5wj0:A, 5wj0:G, 5wms:A, 5wms:G, 5wms:Q, 5wms:S, 4xaf:A, 4xaf:G, 4xag:A, 4xag:G, 4xay:A, 4xay:G, 4xaz:A, 4xaz:G, 4xd3:A, 4xd3:G, 4xd4:A, 4xd4:G, 4xd5:A, 4xd5:G, 4xd6:A, 4xd6:G, 4zst:A, 4zst:B, 4zsu:A, 4zsu:B
5 8a0m:B 964 38 0.1528 0.0114 0.2895 0.90
6 8a0m:D 975 38 0.1528 0.0113 0.2895 0.90
7 8a0c:A 1116 38 0.1528 0.0099 0.2895 0.90 8a0c:B, 8a0m:A, 8a0m:C
8 6bh7:A 308 25 0.1528 0.0357 0.4400 1.5 6fee:A, 8p7f:A
9 8jal:B 573 44 0.1944 0.0244 0.3182 1.6 8jal:A, 8jaq:A, 8jaq:B, 8jaq:J, 8jaq:K, 8jar:A, 8jar:B, 8jas:A, 8jas:B, 8jas:K, 8jas:J, 8jau:A, 8jau:B, 8jav:A, 8jav:B, 8jav:J, 8jav:K
10 3a3w:A 329 25 0.1528 0.0334 0.4400 2.0 3a3x:A, 3a4j:A, 3c86:A, 2d2g:A, 2d2h:A, 2d2j:A, 4np7:A, 3ood:A, 3oqe:A, 2r1k:A, 2r1l:A, 2r1m:A, 2r1n:A, 2r1p:A, 3so7:A, 5vej:A, 5w7h:A, 5w7h:B, 3wml:A
11 6hiy:DA 1426 57 0.2083 0.0105 0.2632 2.4
12 6hiv:DA 1557 57 0.2083 0.0096 0.2632 2.5 6hiw:DA, 7pub:DA
13 4b3g:A 614 66 0.2500 0.0293 0.2727 3.2 4b3g:B
14 6zxd:k 430 58 0.1944 0.0326 0.2414 4.8 6zxe:k, 6zxf:k, 6zxg:k
15 6mfv:A 641 48 0.2083 0.0234 0.3125 5.6 6mfv:B, 6mfv:C, 6mfv:D
16 2jie:A 445 53 0.2639 0.0427 0.3585 6.9 2o9r:A, 2o9t:A, 2z1s:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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