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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GPLDNNNYGEVWLPIQARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSRLSMEDLLKEVGEARS
YGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQ
LCKQAITLARAGADMVCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPS
NSREAEREAEADASEGADMLMVKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVLKSFRRA
GADAVATYYAKEAAKWMVEDMKGTQKFTEPCY

The query sequence (length=352) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3obk:A 352 352 1.0000 1.0000 1.0000 0.0 3obk:B, 3obk:C, 3obk:D, 3obk:E, 3obk:F, 3obk:G, 3obk:H
2 2c18:A 333 322 0.4489 0.4745 0.4907 4.62e-106 1b4k:A, 1b4k:B, 2c14:B, 2c15:B, 2c16:B, 2c18:B, 2c19:B, 1gzg:A, 1gzg:B, 1w54:A, 1w56:A, 1w56:B, 1w5m:A, 1w5m:B, 1w5n:A, 1w5n:B, 1w5o:A, 1w5o:B, 1w5p:A, 1w5p:B, 1w5q:A, 1w5q:B, 2woq:A
3 2c1h:A 319 319 0.4631 0.5110 0.5110 6.70e-99 2c1h:B, 1w1z:A, 1w1z:B
4 5lzl:A 336 329 0.4403 0.4613 0.4711 1.15e-93 5lzl:B, 5lzl:D, 5lzl:E, 5lzl:F, 5lzl:G, 5lzl:I, 5lzl:J, 5lzl:K, 5lzl:L
5 1b4e:A 323 324 0.3949 0.4303 0.4290 3.41e-78 1i8j:A, 1i8j:B, 1l6s:A, 1l6s:B, 1l6y:A, 1l6y:B, 5mhb:A
6 5hms:A 330 310 0.3608 0.3848 0.4097 1.07e-69 1e51:A, 5hms:B, 5hnr:A
7 1h7r:A 342 318 0.3409 0.3509 0.3774 9.79e-59 1aw5:A, 1eb3:A, 1gjp:A, 1h7n:A, 1h7o:A, 1h7p:A, 1ohl:A, 1qml:A, 1qnv:A, 1w31:A, 1ylv:A
8 1pv8:A 276 310 0.3352 0.4275 0.3806 3.44e-53
9 8h68:A 624 66 0.0483 0.0272 0.2576 4.1 8hb2:A, 8hb2:B, 8hb2:C, 8hb2:D, 8hbb:A, 8hbb:B, 8hbb:C, 8hbb:D
10 6zzo:C 265 56 0.0455 0.0604 0.2857 5.1 6zzo:A, 6zzo:B, 6zzo:D, 6zzp:A, 6zzp:B, 6zzp:C, 6zzp:D
11 6b5z:A 252 125 0.0824 0.1151 0.2320 5.7 6b5z:B, 6b60:A, 6b60:B, 6b61:A, 6b61:B, 6b62:A, 6b62:B, 6b63:A, 6b63:B, 6b64:A, 6b64:B, 6b65:A, 6b65:B, 6b66:A, 6b66:B, 1lbx:A, 1lbx:B, 1lby:A, 1lby:B, 1lbz:A, 1lbz:B
12 7cci:B 134 38 0.0398 0.1045 0.3684 7.2 7cci:A, 5xjp:A
13 3oh0:A 585 73 0.0597 0.0359 0.2877 7.5 3oh1:A, 3oh2:A, 3oh3:A, 3oh4:A
14 5gvh:A 311 97 0.0767 0.0868 0.2784 7.8
15 8kei:D 164 36 0.0398 0.0854 0.3889 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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