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BioLiP
>protein
GPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEA
RTLKNQGELPENAKI

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6fyx:i 121 95 1.0000 0.7851 1.0000 4.93e-68 8cah:i, 8cas:A, 6fyy:i, 6gsm:i, 6gsn:i, 3j80:i, 3j81:i, 3jam:i, 3jap:i, 8rw1:i, 8s8d:i, 8s8e:i, 8s8f:i, 8s8g:i, 8s8h:i, 8s8i:i, 8s8j:i, 4uer:0, 6zce:i, 6zu9:A
2 1d7q:A 143 93 0.7053 0.4685 0.7204 1.15e-45 7a09:G, 4kzy:n, 4kzz:n, 8oz0:G, 8p03:j, 8p09:j, 8pj1:q, 8pj2:q, 8pj3:q, 8pj4:q, 8pj5:q, 8pj6:q, 8ppl:Iq, 7qp6:q, 7qp7:q, 7syq:A, 7syr:A, 7sys:A, 7syv:A, 7syw:A, 7syx:A, 7tql:4, 6yal:j, 6yam:j, 6ybw:q, 6zmw:q, 6zp4:G
3 4bts:A0 99 94 0.6211 0.5960 0.6277 1.25e-40 4bts:B0, 4bts:C0, 4bts:D0
4 7ase:w 147 93 0.4526 0.2925 0.4624 7.56e-24
5 5jb3:6 95 83 0.2737 0.2737 0.3133 6.80e-10 5jbh:6, 6sw9:6, 6swc:6, 6swd:6, 7zag:6, 7zah:6, 7zai:6
6 6zxg:j 116 88 0.2105 0.1724 0.2273 2.74e-04 6zxf:j, 6zxh:j
7 4d7e:A 396 52 0.2000 0.0480 0.3654 0.019 4d7e:B
8 4d7e:C 377 44 0.1684 0.0424 0.3636 0.096
9 4ouj:A 281 33 0.1368 0.0463 0.3939 2.2 4ouj:B
10 5ju6:A 835 40 0.1263 0.0144 0.3000 2.7 5ju6:B, 5ju6:C, 5ju6:D
11 6jmv:A 256 23 0.1158 0.0430 0.4783 2.9 8bst:A, 8bst:B, 8bst:C, 8bst:D, 8bsu:A, 8bsu:D, 8bsu:B, 8bsu:C, 8bsu:E, 8bsu:H, 8bsu:F, 8bsu:G, 4e0w:A, 6f28:A, 6f28:B, 6f29:A, 4g8n:A, 4igr:A, 6jmv:B, 4mh5:A, 5nf6:B, 5nf6:A, 4nwc:A, 4nwd:A, 5o4f:B, 5o4f:A, 3s9e:A, 3s9e:B, 3u92:A, 3u92:B, 3u93:A, 3u93:B, 3u94:A, 3u94:B, 3u94:C, 3u94:D
12 5juy:B 1234 66 0.1895 0.0146 0.2727 3.4 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D
13 7tfk:A 360 37 0.1053 0.0278 0.2703 4.4 7tfl:A
14 8dr5:A 646 37 0.1053 0.0155 0.2703 4.7 8dqx:A, 8dqz:A, 8dr0:A, 8dr1:A, 8dr3:A, 8dr4:A, 8dr6:A, 8dr7:A, 1sxj:A, 7tfh:A, 7tfi:A, 7tfj:A, 7thj:A, 7thv:A, 7ti8:A, 7tib:A, 7tic:A, 7tid:A, 7tku:A, 7u19:A, 7u1a:A, 7u1p:A
15 4iv6:B 383 61 0.1684 0.0418 0.2623 7.6 4iv6:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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