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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GPISEFMSTINVEHTYPAVSSLIADLKSRKVQGPFAVAVETALVMRQVISQTRWSTVDQLIDTVRAVGSTLVKAQPTEFS
CGNIIRRILRLIREEYQELLKTADENEKLGGMDMRAVIISGIQDVIDELDKINTDIEVQSMDHLHSNEIILTQGCSKTVE
AFLRFAAKKRKFSVIVAEGFPNNQKGSHAMAKRLAQAGIDTTVISDATIFAIMSRVNKVILGTHAILGNGGLVTYSGAQL
VAQAARHHATPVVVCSGIYKLSPVYPYDLESIIQLSSPDKIMSFNEGDLISRAEILNPYYDYIPPDLVDLFITNLGGYPP
SYLYRIMNDTYDASDTIL

The query sequence (length=338) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6jly:C 338 338 1.0000 1.0000 1.0000 0.0 6jly:D, 6jlz:C, 6jlz:D
2 6caj:C 318 323 0.4112 0.4371 0.4303 1.80e-96 6caj:D, 6ezo:C, 6ezo:D, 7l7g:C, 7l7g:D, 6o81:C, 6o81:D, 6o85:C, 6o85:D
3 6o85:E 357 332 0.2663 0.2521 0.2711 3.82e-22
4 3a9c:B 325 311 0.2160 0.2246 0.2347 9.40e-21 3a9c:A, 3a9c:C, 3a9c:D, 3a9c:E, 3a9c:F, 3vm6:A, 3vm6:B, 3vm6:C
5 5yfj:A 322 279 0.2071 0.2174 0.2509 1.37e-20 5yfj:B, 5yfj:C, 5yfs:A, 5yfs:B, 5yfs:C, 5yft:A, 5yft:B, 5yft:C, 5yfu:A, 5yfu:B, 5yfu:C, 5yfv:A, 5yfv:B, 5yfv:C, 5yfw:A, 5yfw:B, 5yfw:C, 5yfx:A, 5yg5:A, 5yg5:B, 5yg5:C, 5yg6:A, 5yg6:C, 5yg6:B, 5yg7:A, 5yg7:C, 5yg7:B, 5yg8:A, 5yg8:B, 5yg8:C, 5yg9:A, 5yg9:B, 5yg9:C, 5yga:A, 5yga:B, 5yga:C
6 6jly:G 363 340 0.2485 0.2314 0.2471 2.94e-16
7 3ecs:C 294 173 0.1598 0.1837 0.3121 1.01e-15 3ecs:B, 3ecs:D, 3ecs:E, 3ecs:F, 3ecs:G, 3ecs:H, 7kma:A, 7kma:C, 7kma:D, 7kma:E, 7kma:F, 7kma:G, 7kma:H, 7kmf:H, 7kmf:G
8 7kma:B 268 173 0.1538 0.1940 0.3006 2.46e-15
9 2yvk:A 349 135 0.1036 0.1003 0.2593 5.29e-04 2yrf:A, 2yrf:B, 2yvk:B, 2yvk:C, 2yvk:D
10 5aup:I 241 77 0.0680 0.0954 0.2987 0.018 5aun:B, 5auo:B, 5aup:B, 3vx3:A, 3vx3:B
11 8wcs:A 1044 92 0.0799 0.0259 0.2935 0.097
12 8wce:A 994 92 0.0799 0.0272 0.2935 0.64
13 7ug9:A 206 66 0.0473 0.0777 0.2424 1.9
14 7o5b:g 403 86 0.0740 0.0620 0.2907 6.5 7o9f:A, 7o9f:C, 7o9f:B, 4ue4:C
15 8eth:P 130 28 0.0325 0.0846 0.3929 7.2 8eup:P
16 8i0k:A 875 57 0.0444 0.0171 0.2632 9.7 8i0k:B, 7wgr:A, 7wgr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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