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BioLiP
>protein
GPIQLWQFLLELLSDKSCQSFISWTGDGWEFKLADPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTSGKRYVY
RFVCD

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bqa:A 132 85 1.0000 0.6439 1.0000 7.02e-61
2 6da1:B 138 85 0.9647 0.5942 0.9647 1.49e-59 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
3 6vgd:A 98 82 0.6824 0.5918 0.7073 4.38e-39 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
4 3zp5:A 92 82 0.6824 0.6304 0.7073 8.44e-39
5 1awc:A 110 83 0.6706 0.5182 0.6867 2.66e-38
6 4uuv:A 96 85 0.6235 0.5521 0.6235 8.24e-38 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
7 1dux:C 86 83 0.6235 0.6163 0.6386 4.25e-33 1dux:F
8 7jsa:J 88 80 0.6000 0.5795 0.6375 6.54e-33 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
9 8bzm:H 88 82 0.5176 0.5000 0.5366 4.24e-24 8bzm:B
10 1hbx:G 112 66 0.4588 0.3482 0.5909 1.77e-23 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
11 8e67:F 97 80 0.4353 0.3814 0.4625 5.68e-21 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
12 1yo5:C 88 85 0.5294 0.5114 0.5294 5.64e-20
13 3jtg:A 95 82 0.3529 0.3158 0.3659 6.16e-13
14 8eo4:F 95 85 0.3412 0.3053 0.3412 1.73e-07 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 4k2r:A 551 40 0.1647 0.0254 0.3500 0.89 2oq1:A, 2ozo:A, 1u59:A, 4xz0:A, 4xz1:A
16 8iag:B 223 38 0.1412 0.0538 0.3158 2.0 8iag:A
17 7dcj:B 110 64 0.1882 0.1455 0.2500 2.1 5d5u:B, 5d5v:B, 5d5v:D, 7dcj:A, 7dcs:A, 7dcs:B, 7dcs:C, 7dcs:D, 7dcs:E, 7dcs:F, 7dct:A, 7dct:B, 7dct:C, 7dct:D, 7dct:E, 7dct:F, 5hdn:A, 5hdn:C
18 2zwr:B 207 28 0.1176 0.0483 0.3571 2.3 2zwr:A, 2zzi:A, 2zzi:B
19 4zfk:B 231 40 0.1765 0.0649 0.3750 4.3 4zfk:A, 4zfk:C, 4zfk:D, 4zfl:A, 4zfl:C, 4zfl:B, 4zfl:D, 4zfl:E, 4zfl:K, 4zfl:F, 4zfl:L, 4zfl:G, 4zfl:I, 4zfl:H, 4zfl:J
20 7uzf:C 602 32 0.1412 0.0199 0.3750 5.5 9b8p:A, 9brd:A, 7khr:C, 7u4t:B, 7u8p:C, 7u8q:B, 7u8r:A, 7unf:M, 7uzg:C, 7uzh:B, 7uzi:B, 7uzj:C, 7uzk:C, 6vq6:C, 6vq7:B, 6vq8:A, 6vq9:C, 6vqa:B, 6vqb:A, 6wlz:C, 6wm2:C, 6wm3:B, 6wm4:A, 6xbw:C, 6xby:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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