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BioLiP
>protein
GPHMVSSAVKCGICRGVDGKYKCPKCGVRYCSLKCYKDAAKHVHKESEQ

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2n95:A 49 49 1.0000 1.0000 1.0000 1.99e-30
2 2n94:A 48 37 0.4286 0.4375 0.5676 1.37e-06
3 1x4s:A 59 37 0.2857 0.2373 0.3784 0.002
4 6gej:S 208 27 0.2449 0.0577 0.4444 0.002 6gen:S
5 2yqq:A 56 42 0.3265 0.2857 0.3810 0.019
6 8x1c:L 105 35 0.2653 0.1238 0.3714 0.050
7 6sw9:C 61 18 0.2041 0.1639 0.5556 1.2 6swc:C, 6swd:C, 7zag:C, 7zah:C, 7zai:C, 7zhg:C
8 6skg:Bo 43 25 0.2041 0.2326 0.4000 1.4
9 4s28:A 520 23 0.1633 0.0154 0.3478 1.5 4n7q:A, 4s25:A, 4s26:A, 4s26:B, 4s27:A, 4s29:A
10 5ijl:A 943 20 0.1837 0.0095 0.4500 2.3
11 8ppt:B 1191 20 0.1837 0.0076 0.4500 2.3 8ppu:B, 8ppv:B, 6t8h:B
12 6tmf:W 56 18 0.2041 0.1786 0.5556 2.5 6skf:Az, 6skg:Az, 6th6:Az
13 2ecy:A 66 23 0.2245 0.1667 0.4783 4.1
14 5nus:B 74 13 0.1633 0.1081 0.6154 4.4 5obz:B
15 2mdg:A 55 19 0.2041 0.1818 0.5263 5.2
16 6knb:B 1120 20 0.1837 0.0080 0.4500 5.4 6knc:B
17 6k8n:A 668 30 0.2449 0.0180 0.4000 5.5 6k8n:B, 6k8n:C, 6k8n:D, 6k8o:A
18 6s6t:E 472 14 0.1224 0.0127 0.4286 5.8 6s6s:G, 6s6s:E, 6s6s:F, 6s6s:H, 6s6t:F, 6s6t:G, 6s6u:G, 6s6u:H, 6s6u:I, 6s6u:J, 6s6x:G, 6s6x:H, 6s6x:I, 6s6x:J, 6s6x:K, 6s6x:L, 2vdc:G, 2vdc:H, 2vdc:I, 2vdc:J, 2vdc:K, 2vdc:L
19 8haw:A 479 34 0.2245 0.0230 0.3235 7.4 8hav:A, 8haw:B
20 7yj0:D 622 23 0.1837 0.0145 0.3913 7.6 7yj0:A, 7yj0:B, 7yj0:C
21 7zi4:R 101 18 0.1633 0.0792 0.4444 7.9 6hts:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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