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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GPHMTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY
IIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWL
ERGPLEPSEPAVVAAARVGVEWARKPLRFYVRGSPWVSVVDRVAEQ

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1f6o:A 211 208 0.9757 0.9526 0.9663 1.47e-146 1bnk:A, 1ewn:A, 1f4r:A, 3qi5:A, 3qi5:B, 3uby:A, 7xfh:K, 7xfj:K, 7xfm:K
2 7zm7:A 711 104 0.1311 0.0380 0.2596 0.85 7zmb:A, 7zmg:A
3 1hcy:A 644 59 0.0874 0.0280 0.3051 5.9
4 6l8s:A 650 59 0.0874 0.0277 0.3051 6.0 1hc1:A, 1hc1:B, 1hc1:C, 1hc1:D, 1hc1:E, 1hc1:F, 6l8s:B, 6l8s:C
5 4x0o:E 360 36 0.0583 0.0333 0.3333 8.0 5kp2:B, 5v0p:A, 5v0p:B, 4x0o:A, 4x0o:B, 4x0o:D, 4x0o:F, 4x0o:G, 4x0o:H
6 5agy:A 219 32 0.0583 0.0548 0.3750 8.4 5agy:B, 4chs:A, 4chs:B, 4top:A, 4top:B, 2vo4:A, 2vo4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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