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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPHMQTLTLSPNLIGFNSNEGEKLLLTSRSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPYRVFTQ
DNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQER
GGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKT

The query sequence (length=220) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tho:A 220 220 1.0000 1.0000 1.0000 1.83e-167 2btw:A, 2btw:B, 2bu3:A, 2bu3:B, 6th5:A, 6th5:B, 6tho:B, 6tjl:A, 6tjl:B
2 6cq2:A 688 103 0.1364 0.0436 0.2913 1.7 6cqi:A
3 6rxt:US 451 46 0.0773 0.0377 0.3696 2.2 6rxu:US, 6rxv:US, 6rxy:US, 6rxz:US
4 7xcm:A 494 118 0.1364 0.0607 0.2542 2.2 7xcm:B, 7xcm:C, 7xcm:D, 7xcm:E, 7xcm:F, 7xcn:A, 7xcn:B, 7xcn:C, 7xcn:D, 7xcn:E, 7xcn:F
5 6muk:A 363 28 0.0500 0.0303 0.3929 2.6
6 1ebd:A 455 62 0.0955 0.0462 0.3387 2.7 1ebd:B
7 6pcm:A 793 124 0.1591 0.0441 0.2823 3.6 6pcm:B
8 5wxu:B 400 67 0.1045 0.0575 0.3433 3.7 5wxu:A, 5wxu:D, 5wxu:F, 5wxu:C, 5wxu:E
9 7wwp:A 420 42 0.0682 0.0357 0.3571 4.1 7wwq:A
10 7obb:A 1510 69 0.0909 0.0132 0.2899 4.5
11 7ob9:A 1535 69 0.0909 0.0130 0.2899 5.0 7oba:A
12 5mqr:A 1082 85 0.0909 0.0185 0.2353 5.0 5mqs:A
13 7vbc:A 1477 69 0.0909 0.0135 0.2899 5.0 7vba:A, 7vbb:A
14 6agm:A 334 57 0.0773 0.0509 0.2982 6.1 6agm:B, 6agm:C, 6agm:D
15 8czq:A 655 61 0.0909 0.0305 0.3279 7.6
16 5og1:A 819 81 0.1045 0.0281 0.2840 8.0 5ofo:C, 5ofo:F, 5ofo:E, 5ofo:D, 5ofo:B, 5ofo:A, 5og1:E, 6rn2:A, 6rn2:B, 6rn2:C, 6rn2:D, 6rn2:F, 6rn2:E, 6rn3:A, 6rn3:B, 6rn3:C, 6rn3:D, 6rn3:E, 6rn4:B, 6rn4:C, 6rn4:D, 6rn4:E
17 7e7q:A 1958 64 0.0818 0.0092 0.2812 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218