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BioLiP
>protein
GPHMAVLCGVCGIKEFKYKCPRCLVQTCSLECSKKHKTRDNCSGQTHD

The query sequence (length=48) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2n94:A 48 48 1.0000 1.0000 1.0000 5.56e-31
2 2n95:A 49 37 0.4375 0.4286 0.5676 1.34e-06
3 2yqq:A 56 37 0.3333 0.2857 0.4324 0.002
4 1x4s:A 59 37 0.3333 0.2712 0.4324 0.006
5 1s0u:A 391 20 0.1875 0.0230 0.4500 0.91
6 6knb:B 1120 44 0.2917 0.0125 0.3182 1.2 6knc:B
7 6gej:S 208 29 0.2083 0.0481 0.3448 2.0 6gen:S
8 5ikf:A 150 39 0.2917 0.0933 0.3590 2.4
9 2yqp:A 60 36 0.2917 0.2333 0.3889 6.0
10 6r4o:A 841 13 0.1458 0.0083 0.5385 6.6
11 1be3:A 446 17 0.2083 0.0224 0.5882 8.4 2a06:A, 1bgy:A, 1bgy:M, 4d6t:N, 4d6u:A, 4d6u:N, 7dgq:k, 7dgq:w, 7dgr:k, 7dgr:w, 7dgs:k, 7dgs:w, 7dkf:A1, 7dkf:M1, 6fo0:N, 6fo0:A, 6fo2:N, 6fo2:A, 5luf:c, 5luf:l, 5nmi:N, 5nmi:A, 1pp9:A, 1ppj:A, 6qbx:a3, 6qc3:a1, 7tz6:A, 7tz6:N, 2ybb:a, 2ybb:A
12 5yu6:C 1073 22 0.2083 0.0093 0.4545 8.6 3a6p:A, 3a6p:F, 5yu6:A
13 3mn8:B 386 34 0.2500 0.0311 0.3529 8.7 3mn8:A, 3mn8:C, 3mn8:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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